Sandbox Reserved 1100

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== STRUCTURE ==
== STRUCTURE ==
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The Adiponectin receptor 1 is an integral membrane protein composed of 375 amino acids and its molecular weight is 42,4 kDa. This protein contains an internal <scene name='82/829353/N-terminus_domain/2'>N-terminus domain</scene> (residues 89 to 120), a short intracellular domain called <scene name='82/829353/Helice0/2'>helix 0</scene> (residues 121 to 129), <scene name='82/829353/7helices/1'>seven transmembrane helices</scene> (residues 134 to 364) and an external <scene name='82/829353/C-terminus_domain/3'>C-terminus domain</scene> (residues 365 to 375).
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The Adiponectin receptor 1 is an integral membrane protein composed of 375 amino acids and its molecular weight is 42,4 kDa. This protein can be decomposed into different parts: an internal <scene name='82/829353/N-terminus_domain/2'>N-terminus domain</scene> (residues 89 to 120), a short intracellular domain called <scene name='82/829353/Helice0/2'>helix 0</scene> (residues 121 to 129), <scene name='82/829353/7helices/1'>seven transmembrane helices</scene> (residues 134 to 364) and an external <scene name='82/829353/C-terminus_domain/3'>C-terminus domain</scene> (residues 365 to 375).
The organisation of the structure of the Adiponectin receptor 1 is the opposite to [[G protein-coupled receptor]] family. Indeed, the Adiponectin receptor has an internal <scene name='82/829353/N-terminus_domain/2'>N-terminus domain</scene> and an external <scene name='82/829353/C-terminus_domain/3'>C-terminus domain</scene> while the G-protein family has an internal N-terminus domain and an external C-terminus domain.
The organisation of the structure of the Adiponectin receptor 1 is the opposite to [[G protein-coupled receptor]] family. Indeed, the Adiponectin receptor has an internal <scene name='82/829353/N-terminus_domain/2'>N-terminus domain</scene> and an external <scene name='82/829353/C-terminus_domain/3'>C-terminus domain</scene> while the G-protein family has an internal N-terminus domain and an external C-terminus domain.
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The Adiponectin receptor 1 contains <scene name='82/829353/7helices/1'>seven transmembrane helices</scene> linked thanks to three extracellular loops and three intracellular loops. The <scene name='82/829353/Helix1/2'>helix I</scene> is formed by the residues 135 to 157, <scene name='82/829353/Helix2/2'>helix II</scene> by the residues 169 to 192, the <scene name='82/829353/Helix3/2'>helix III</scene> by the residues 198 to 227, the <scene name='82/829353/Helix4/2'>helice IV</scene> by the residues 232 to 252, the <scene name='82/829353/Helice5/2'>helix V</scene> by the residues 264 to 288 <scene name='82/829353/Helix6/2'>heliX VI</scene> by the residues 305 to 319 and the <scene name='82/829353/Helix7/2'>helix VII</scene> by the residues 336 to 364 .Besides, the <scene name='82/829353/Helix3/2'>helix III</scene> and <scene name='82/829353/Helix6/2'>VI</scene> are longer than the other helices. These <scene name='82/829353/7tm/2'>seven transmembrane helices</scene> have a clockwise circular specific organisation (from helix I to helix VII) and form a bundle.
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The Adiponectin receptor 1 contains <scene name='82/829353/7helices/1'>seven transmembrane helices</scene> linked thanks to three extracellular loops and three intracellular loops. The <scene name='82/829353/Helix1/2'>helix I</scene> is formed by the residues 135 to 157, <scene name='82/829353/Helix2/2'>helix II</scene> by the residues 169 to 192, the <scene name='82/829353/Helix3/2'>helix III</scene> by the residues 198 to 227, the <scene name='82/829353/Helix4/2'>helice IV</scene> by the residues 232 to 252, the <scene name='82/829353/Helice5/2'>helix V</scene> by the residues 264 to 288 <scene name='82/829353/Helix6/2'>heliX VI</scene> by the residues 305 to 319 and the <scene name='82/829353/Helix7/2'>helix VII</scene> by the residues 336 to 364 .Besides, the <scene name='82/829353/Helix3/2'>helix III</scene> and <scene name='82/829353/Helix7/2'>VII</scene> are longer than the other helices. These <scene name='82/829353/7tm/2'>seven transmembrane helices</scene> have a clockwise circular specific organisation (from helix I to helix VII) and form a bundle.
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Concerning the extracellular faces, the three extracellular loops which connect the transmembrane helices are exposed and it is the same for the <scene name='82/829353/C-terminus_domain/3'>C-terminus domain</scene>. Besides, <scene name='82/829353/Helix3/2'>helix III</scene> and the <scene name='82/829353/Helix6/2'>VI</scene>are longer than the other helices and as a result the <scene name='82/829353/C-terminus_domain/3'>C-terminus domain</scene> two turns of the ??? protrude and are exposed too.
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Concerning the extracellular faces, the three extracellular loops which connect the transmembrane helices are exposed and it is the same for the <scene name='82/829353/C-terminus_domain/3'>C-terminus domain</scene>. Besides, <scene name='82/829353/Helix3/2'>helix III</scene> and the <scene name='82/829353/Helix7/2'>VII</scene> are longer than the other helices and as a result the <scene name='82/829353/C-terminus_domain/3'>C-terminus domain</scene> two turns of the <scene name='82/829353/Helix7/2'>VII</scene> are exposed too.
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The seven transmembrane helices surround a large internal cavity where a <scene name='82/829353/Zinc-binding_site/2'>zinc-binding site</scene> can be found. This cavity located from the cytoplasmic surface to the middle of the outer lipid layer of the membrane has small openings between the <scene name='82/829353/Helice5/2'>helix V</scene> and <scene name='82/829353/Helix6/2'>VI</scene>, and between the <scene name='82/829353/Helix4/2'>helice IV</scene> and <scene name='82/829353/Helix6/2'>VI</scene>. It has been assumed that these openings are involved in the entrance and exit of both substrate and product.
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In the middle of the seven transmembrane helices there is a large internal cavity where a <scene name='82/829353/Zinc-binding_site/2'>zinc-binding site</scene> can be found. This cavity located from the cytoplasmic surface to the middle of the outer lipid layer of the membrane has small openings between the <scene name='82/829353/Helice5/2'>helix V</scene> and <scene name='82/829353/Helix6/2'>VI</scene>, and between the <scene name='82/829353/Helix4/2'>helice IV</scene> and <scene name='82/829353/Helix6/2'>VI</scene>. It has been assumed that these openings are involved in the entrance and exit of both substrate and product.
In this cavity, there is a zinc ion which is coordinated thanks to three histidine residues. These three histidine residues are <scene name='82/829353/H191/1'>H191</scene> in the helix II, <scene name='82/829353/H337/1'>H337</scene> and <scene name='82/829353/H341/1'>H341</scene> in the <scene name='82/829353/Helix7/2'>helix VII</scene>. As a result, the zinc ion is in the intracellular layer of the membrane, in the neighbourhood of 4° deep from the inner surface of the plasma membrane. Thanks to its tetrahedral coordination, this zinc ion binds the <scene name='82/829353/Helix2/2'>helix II</scene>, <scene name='82/829353/Helix3/2'>III</scene> and <scene name='82/829353/Helix7/2'>VII</scene> together. The adiponectin-stimulated AMPK phosphorylation doesn’t directly require the zinc binding site, nevertheless it has been supposed that the zinc ion allows a stabilizing effect.
In this cavity, there is a zinc ion which is coordinated thanks to three histidine residues. These three histidine residues are <scene name='82/829353/H191/1'>H191</scene> in the helix II, <scene name='82/829353/H337/1'>H337</scene> and <scene name='82/829353/H341/1'>H341</scene> in the <scene name='82/829353/Helix7/2'>helix VII</scene>. As a result, the zinc ion is in the intracellular layer of the membrane, in the neighbourhood of 4° deep from the inner surface of the plasma membrane. Thanks to its tetrahedral coordination, this zinc ion binds the <scene name='82/829353/Helix2/2'>helix II</scene>, <scene name='82/829353/Helix3/2'>III</scene> and <scene name='82/829353/Helix7/2'>VII</scene> together. The adiponectin-stimulated AMPK phosphorylation doesn’t directly require the zinc binding site, nevertheless it has been supposed that the zinc ion allows a stabilizing effect.
AdipoR1 has the capacity to form oligomers. Indeed, in living cell both monomers and oligomers are present. A specific motif was identified to contribute to the AdipoR1 dimerization: it is the motif GxxxG in the transmembrane <scene name='82/829353/Helice5/2'>helix V</scene>. Besides, the dimerization of AdipoR1 is also regulated. This dimerization is inhibited by the fixation of the full-length adiponectin while the globular adiponectin has any impact on the dimerization level of the AdipoR1 receptor. Thanks to mutant experiment, it can be supposed that the collagen-like domain of the full-length adiponectin composed of residues 42 to 107 (plus loin dans l’article: 60 à 89…) is responsible to the dimer dissociation. There are strong evidences that dimerization of the AdipoR1 receptor has a role during the biosynthesis, the trafficking and the signalling of the seven transmembrane receptors.
AdipoR1 has the capacity to form oligomers. Indeed, in living cell both monomers and oligomers are present. A specific motif was identified to contribute to the AdipoR1 dimerization: it is the motif GxxxG in the transmembrane <scene name='82/829353/Helice5/2'>helix V</scene>. Besides, the dimerization of AdipoR1 is also regulated. This dimerization is inhibited by the fixation of the full-length adiponectin while the globular adiponectin has any impact on the dimerization level of the AdipoR1 receptor. Thanks to mutant experiment, it can be supposed that the collagen-like domain of the full-length adiponectin composed of residues 42 to 107 (plus loin dans l’article: 60 à 89…) is responsible to the dimer dissociation. There are strong evidences that dimerization of the AdipoR1 receptor has a role during the biosynthesis, the trafficking and the signalling of the seven transmembrane receptors.

Revision as of 17:29, 15 January 2020

This Sandbox is Reserved from 25/11/2019, through 30/9/2020 for use in the course "Structural Biology" taught by Bruno Kieffer at the University of Strasbourg, ESBS. This reservation includes Sandbox Reserved 1091 through Sandbox Reserved 1115.
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The AdipoR1 receptor

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References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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