Sandbox Reserved 1091
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The '''structure of ASP''' is very similar to that of ''Kex2'' ([[1r64]]), but it has a unique extra-occluding region close to its active site within the subtilisin domains. This extra-occluding region is unique and it could serve as a useful target to make the development of new antisepsis drugs easier. | The '''structure of ASP''' is very similar to that of ''Kex2'' ([[1r64]]), but it has a unique extra-occluding region close to its active site within the subtilisin domains. This extra-occluding region is unique and it could serve as a useful target to make the development of new antisepsis drugs easier. | ||
- | The '''domain structure of ASP''' consists of the propeptide, the catalytic subtilisin-like domain, and the P-domain. The ASP molecule have two mean regions: an N-terminal region extending from Gly-3 to Pro-431 and forming the <scene name='82/829344/The_subtilisin_domain/1'>subtilisin domain</scene>, and a C-terminal region extending from Leu-432 to His-595 and forming the <scene name='82/829344/The_p-domain/ | + | The '''domain structure of ASP''' consists of the propeptide, the catalytic subtilisin-like domain, and the P-domain. The ASP molecule have two mean regions: an N-terminal region extending from Gly-3 to Pro-431 and forming the <scene name='82/829344/The_subtilisin_domain/1'>subtilisin domain</scene>, and a C-terminal region extending from Leu-432 to His-595 and forming the <scene name='82/829344/The_p-domain/2'>P-domain</scene>. |
Moreover, we can find three <scene name='82/829344/Calcium_binding_sites/2'>Ca2+ Binding Sites</scene> in the ASP Structure (Ca1, Ca2 and Ca3). <scene name='82/829344/Ca1_et_ca2/1'>Ca1 and Ca2</scene> are situated in the N-terminal domain, and <scene name='82/829344/Ca3/1'>Ca3</scene> is situated in the C-terminal domain. It were assigned to ASP based on electron density, counter charges, and coordination. But in contrary to ''Kex2'', ASP contains no Ca2+ binding sites near its catalytic site. Those Ca2+ binding Site are important because ... | Moreover, we can find three <scene name='82/829344/Calcium_binding_sites/2'>Ca2+ Binding Sites</scene> in the ASP Structure (Ca1, Ca2 and Ca3). <scene name='82/829344/Ca1_et_ca2/1'>Ca1 and Ca2</scene> are situated in the N-terminal domain, and <scene name='82/829344/Ca3/1'>Ca3</scene> is situated in the C-terminal domain. It were assigned to ASP based on electron density, counter charges, and coordination. But in contrary to ''Kex2'', ASP contains no Ca2+ binding sites near its catalytic site. Those Ca2+ binding Site are important because ... | ||
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'''The Subtilisin Domain:''' It contains 10 helices (alpha 1 to 10) and twelve chains (béta 1 to 10 and béta 13 to 14). The N-terminal domain of ASP seems to be like the catalytic domain of ''Kex2'', which is similar to those of subtilisin and other subtilisin-related proteases. This ASP catalytic site contains <scene name='82/829344/Catalytic_triad/2'>the catalytic triad</scene> Asp-78, His-115, and Ser-336 residues characteristic of subtilisins. In addition, 4 loops (L) protrude from the N-terminal subtilisin domain of ASP: Gly-3– Pro-26 (<scene name='82/829344/L1/1'>L1</scene>), Asn-221–Phe-241 (<scene name='82/829344/L2/1'>L2</scene>), Gly-300–Cys-326 (<scene name='82/829344/L3/1'>L3</scene>), and Gln-377–Glu-397 (<scene name='82/829344/L4/1'>L4</scene>). L1, L2, and L3 have random coil structure, whereas L4 forms a hairpin that protrudes toward the P-domain. Moreover, two <scene name='82/829344/Disulfide_bridges/2'>disulfide bridges</scene> are formed between Cys-4 and Cys-24 in L1 and between Cys-301 and Cys-326 in L3, which stabilize those loops. | '''The Subtilisin Domain:''' It contains 10 helices (alpha 1 to 10) and twelve chains (béta 1 to 10 and béta 13 to 14). The N-terminal domain of ASP seems to be like the catalytic domain of ''Kex2'', which is similar to those of subtilisin and other subtilisin-related proteases. This ASP catalytic site contains <scene name='82/829344/Catalytic_triad/2'>the catalytic triad</scene> Asp-78, His-115, and Ser-336 residues characteristic of subtilisins. In addition, 4 loops (L) protrude from the N-terminal subtilisin domain of ASP: Gly-3– Pro-26 (<scene name='82/829344/L1/1'>L1</scene>), Asn-221–Phe-241 (<scene name='82/829344/L2/1'>L2</scene>), Gly-300–Cys-326 (<scene name='82/829344/L3/1'>L3</scene>), and Gln-377–Glu-397 (<scene name='82/829344/L4/1'>L4</scene>). L1, L2, and L3 have random coil structure, whereas L4 forms a hairpin that protrudes toward the P-domain. Moreover, two <scene name='82/829344/Disulfide_bridges/2'>disulfide bridges</scene> are formed between Cys-4 and Cys-24 in L1 and between Cys-301 and Cys-326 in L3, which stabilize those loops. | ||
- | '''The P-domain:''' The core of the P-domain in ASP contains 8 béta-strands (béta 16 18 23 and 26). The <scene name='82/829344/Extra_occluding_region/ | + | '''The P-domain:''' The core of the P-domain in ASP contains 8 béta-strands (béta 16 18 23 and 26). The <scene name='82/829344/Extra_occluding_region/2'>extra occluding-region</scene> is comprised of two parts, <scene name='82/829344/Pl1/2'>pL1</scene>(Gly 521–Thr 525, béta 5, 6, and 12) and <scene name='82/829344/Pl2/2'>pL2</scene> (Gly-557–Asn-578, béta 25), and it is situated close to <scene name='82/829344/Catalytic_triad/2'>the catalytic triad</scene> Asp-78,His-115,and Ser-336. |
https://www.degruyter.com/view/j/bchm.2017.398.issue-10/hsz-2016-0344/graphic/j_hsz-2016-0344_fig_001.jpg | https://www.degruyter.com/view/j/bchm.2017.398.issue-10/hsz-2016-0344/graphic/j_hsz-2016-0344_fig_001.jpg |
Revision as of 18:20, 15 January 2020
This Sandbox is Reserved from 25/11/2019, through 30/9/2020 for use in the course "Structural Biology" taught by Bruno Kieffer at the University of Strasbourg, ESBS. This reservation includes Sandbox Reserved 1091 through Sandbox Reserved 1115. |
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The serine protease from Aeromonas sobria
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References
- ↑ Fuller RS, Brake A, Thorner J. Yeast prohormone processing enzyme (KEX2 gene product) is a Ca2+-dependent serine protease. Proc Natl Acad Sci U S A. 1989 Mar;86(5):1434-8. PMID:2646633