Sandbox Reserved 1091
From Proteopedia
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'''The P-domain:''' The core of the P-domain in ASP contains 8 béta-strands (béta 16 18 23 and 26). The <scene name='82/829344/Extra_occluding_region/2'>extra occluding-region</scene> is comprised of two parts, <scene name='82/829344/Pl1/3'>pL1</scene>(Gly 521–Thr 525, béta 5, 6, and 12) and <scene name='82/829344/Pl2/3'>pL2</scene> (Gly-557–Asn-578, béta 25), and it is situated close to <scene name='82/829344/Catalytic_triad/2'>the catalytic triad</scene> Asp-78,His-115,and Ser-336. | '''The P-domain:''' The core of the P-domain in ASP contains 8 béta-strands (béta 16 18 23 and 26). The <scene name='82/829344/Extra_occluding_region/2'>extra occluding-region</scene> is comprised of two parts, <scene name='82/829344/Pl1/3'>pL1</scene>(Gly 521–Thr 525, béta 5, 6, and 12) and <scene name='82/829344/Pl2/3'>pL2</scene> (Gly-557–Asn-578, béta 25), and it is situated close to <scene name='82/829344/Catalytic_triad/2'>the catalytic triad</scene> Asp-78,His-115,and Ser-336. | ||
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'''Mechanism:''' The mechanism is the following: The histidine will react with the serine and deprotonate it. '''The deprotonated hydroxyl group of the serine will act as a nucleophilic species''' and attack the carbon from the carbonyl function on the peptide. This will lead to the formation of a tetrahedral intermediate. Then, a second tetrahedral intermediate will be formed, but with the attack of a deprotonated water molecule. At the end, the regeneration of the active site will be done with the release of the peptide cut in two parts. | '''Mechanism:''' The mechanism is the following: The histidine will react with the serine and deprotonate it. '''The deprotonated hydroxyl group of the serine will act as a nucleophilic species''' and attack the carbon from the carbonyl function on the peptide. This will lead to the formation of a tetrahedral intermediate. Then, a second tetrahedral intermediate will be formed, but with the attack of a deprotonated water molecule. At the end, the regeneration of the active site will be done with the release of the peptide cut in two parts. | ||
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Performed experiments aimed to study the classification of ASP through inhibition, as well as the ability to enhance vascular permeability in dorsal skin tissue of rodents (Wistar rat). | Performed experiments aimed to study the classification of ASP through inhibition, as well as the ability to enhance vascular permeability in dorsal skin tissue of rodents (Wistar rat). | ||
- | ASP was shown not to be a metallo-protease, because its activity is not affected by metal chelators (EDTA, EGTA, o-phenantroline) or metallo-protease inhibitors (phosphoramidon). | + | ASP was shown not to be a metallo-protease, because its activity is not affected by metal chelators (EDTA, EGTA, o-phenantroline) or metallo-protease inhibitors (phosphoramidon). <ref>https://www.degruyter.com/view/j/bchm.2017.398.issue-10/hsz-2016-0344/hsz-2016-0344.xml</ref> |
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The ASP protease activity was strongly attenuated by serine protease inhibitors (DFP, AEBSEF) suggesting a hypothetical belonging to the subtilisin serine proteases family. Furthermore the predicted amino acid sequence reinforces this speculation. However, the size of the ASP (MW 65000) is unlike other subtilisin proteases (MW 30000). Also the amino acid residues composition is different from the family’s characteristics because ASP shows unique cysteine residues that other family members don t show. Therefore we can state that it is likely that ASP belongs to the subtilisin serine proteases family, however it remains unclear. | The ASP protease activity was strongly attenuated by serine protease inhibitors (DFP, AEBSEF) suggesting a hypothetical belonging to the subtilisin serine proteases family. Furthermore the predicted amino acid sequence reinforces this speculation. However, the size of the ASP (MW 65000) is unlike other subtilisin proteases (MW 30000). Also the amino acid residues composition is different from the family’s characteristics because ASP shows unique cysteine residues that other family members don t show. Therefore we can state that it is likely that ASP belongs to the subtilisin serine proteases family, however it remains unclear. |
Revision as of 21:30, 15 January 2020
This Sandbox is Reserved from 25/11/2019, through 30/9/2020 for use in the course "Structural Biology" taught by Bruno Kieffer at the University of Strasbourg, ESBS. This reservation includes Sandbox Reserved 1091 through Sandbox Reserved 1115. |
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The serine protease from Aeromonas sobria
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References
- ↑ Fuller RS, Brake A, Thorner J. Yeast prohormone processing enzyme (KEX2 gene product) is a Ca2+-dependent serine protease. Proc Natl Acad Sci U S A. 1989 Mar;86(5):1434-8. PMID:2646633
- ↑ https://www.degruyter.com/view/j/bchm.2017.398.issue-10/hsz-2016-0344/hsz-2016-0344.xml