TATA-Binding Protein
From Proteopedia
(Difference between revisions)
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| + | == 3D Structures of TATA-binding protein == | ||
| + | [[TATA-binding protein 3D structures]] | ||
</StructureSection> | </StructureSection> | ||
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* TBP | * TBP | ||
| - | **[[2z8u]] – TBP – ''Methanococcus janaschii''<br /> | ||
| - | **[[1pcz]] – PwTBP - ''Pyrococcus woesei''<br /> | ||
**[[1vok]] – AtTBP - ''Arabidopsis thaliana''<br /> | **[[1vok]] – AtTBP - ''Arabidopsis thaliana''<br /> | ||
**[[1tbp]] – yTBP - yeast<br /> | **[[1tbp]] – yTBP - yeast<br /> | ||
**[[4b04]] – yTBP (mutant)<br /> | **[[4b04]] – yTBP (mutant)<br /> | ||
**[[1mp9]] – TBP – ''Sulfolobus acidocaldarius''<br /> | **[[1mp9]] – TBP – ''Sulfolobus acidocaldarius''<br /> | ||
| - | **[[3eik]] – TBP – ''Encephalitozoon cuniculi'' | + | **[[3eik]] – TBP – ''Encephalitozoon cuniculi''<br /> |
| + | **[[2z8u]] – TBP – ''Methanococcus janaschii''<br /> | ||
| + | **[[1pcz]] – PwTBP - ''Pyrococcus woesei''<br /> | ||
* TBP+DNA TATA box | * TBP+DNA TATA box | ||
| - | **[[1ytb]] - yTBP + DNA TATA<br /> | ||
**[[1cdw]] - hTBP core domain+ DNA TATA - human<br /> | **[[1cdw]] - hTBP core domain+ DNA TATA - human<br /> | ||
**[[1tgh]] - hTBP + DNA TATA<br /> | **[[1tgh]] - hTBP + DNA TATA<br /> | ||
**[[1qn5]], [[1qn6]], [[1qn7]], [[1qn8]], [[1qn9]], [[1qna]], [[1qnb]], [[1qnc]], [[1qne]], [[1qn3]], [[1qn4]], [[1vto]] - AtTBP + DNA TATA <br /> | **[[1qn5]], [[1qn6]], [[1qn7]], [[1qn8]], [[1qn9]], [[1qna]], [[1qnb]], [[1qnc]], [[1qne]], [[1qn3]], [[1qn4]], [[1vto]] - AtTBP + DNA TATA <br /> | ||
| + | **[[1ytb]] - yTBP + DNA TATA<br /> | ||
* TBP+DNA TATA box +TFIIA | * TBP+DNA TATA box +TFIIA | ||
| + | **[[1nvp]] - hTBP C-terminal+ TFIIA α, β, γ chains+ DNA TATA <br /> | ||
| + | **[[1jfi]] - hTBP C-terminal+ TFIIA NC2+ DNA TATA<br /> | ||
**[[1rm1]] – yTBP+TFIIA α, β, γ chains+ DNA TATA <br /> | **[[1rm1]] – yTBP+TFIIA α, β, γ chains+ DNA TATA <br /> | ||
**[[1ytf]] - yTBP+TFIIA + DNA TATA<br /> | **[[1ytf]] - yTBP+TFIIA + DNA TATA<br /> | ||
**[[1nh2]] – yTBP C-terminal+TFIIA α, β, γ chains+ DNA TATA<br /> | **[[1nh2]] – yTBP C-terminal+TFIIA α, β, γ chains+ DNA TATA<br /> | ||
| - | **[[1nvp]] - hTBP C-terminal+ TFIIA α, β, γ chains+ DNA TATA <br /> | ||
| - | **[[1jfi]] - hTBP C-terminal+ TFIIA NC2+ DNA TATA<br /> | ||
* TBP+DNA TATA box +TFIIB | * TBP+DNA TATA box +TFIIB | ||
| - | **[[1tba]] – yTBP core domain+TAFII230 fragment - NMR<br /> | ||
**[[1c9b]] - hTBP C-terminal+TFIIBC+adenovirus major late promoter<br /> | **[[1c9b]] - hTBP C-terminal+TFIIBC+adenovirus major late promoter<br /> | ||
**[[1vol]] – AtTBP+hTFIIB+DNA TATA<br /> | **[[1vol]] – AtTBP+hTFIIB+DNA TATA<br /> | ||
| - | **[[1ais]], [[1d3u]] - PwTBP N-terminal+ TFIIB C-terminal + DNA TATA <br /> | ||
**[[1tba]] – yTBP core domain+TAFII230 fragment - NMR<br /> | **[[1tba]] – yTBP core domain+TAFII230 fragment - NMR<br /> | ||
| + | **[[1ais]], [[1d3u]] - PwTBP N-terminal+ TFIIB C-terminal + DNA TATA <br /> | ||
* TBP+DNA TATA+TFIIIB | * TBP+DNA TATA+TFIIIB | ||
| - | **[[1ngm]] - yTBP C-terminal+TFIIIB BRF1 subunit + DNA TATA<br /> | ||
**[[4roc]], [[4rod]], [[4roe]], [[5n9g]] - hTBP + TFIIIB + DNA TATA<br /> | **[[4roc]], [[4rod]], [[4roe]], [[5n9g]] - hTBP + TFIIIB + DNA TATA<br /> | ||
| + | **[[1ngm]] - yTBP C-terminal+TFIIIB BRF1 subunit + DNA TATA<br /> | ||
* TBP+DNA TATA+TFIIA+TFIID | * TBP+DNA TATA+TFIIA+TFIID | ||
| - | **[[5fur]] - yTBP + | + | **[[6mzm]] - hTBP +TFIIA + TFIID + DNA TATA – Cryo EM<br /> |
| + | **[[5fur]] - yTBP +TFIIA + TFIID + DNA TATA<br /> | ||
| + | |||
| + | * TBP+TFIID | ||
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| + | **[[6mzl]], [[6mzd]] - hTBP + TFIID – Cryo EM<br /> | ||
* TBP in RNA polymerase II complex | * TBP in RNA polymerase II complex | ||
| - | **[[5fyw]], [[5fz5]], [[5fmf]], [[4v1n]], [[4v1o]], [[5sva]], [[5oqj]], [[5oqm]] – yTBP + DNA-directed RNA polymerase II + TFII + DNA - Cryo EM<br /> | ||
**[[5iy6]], [[5iy7]], [[5iy8]], [[5iy9]], [[5iya]], [[5iyb]], [[5iyc]], [[5iyd]] – hTBP + DNA-directed RNA polymerase II + TFII + DNA - Cryo EM<br /> | **[[5iy6]], [[5iy7]], [[5iy8]], [[5iy9]], [[5iya]], [[5iyb]], [[5iyc]], [[5iyd]] – hTBP + DNA-directed RNA polymerase II + TFII + DNA - Cryo EM<br /> | ||
| + | **[[5fyw]], [[5fz5]], [[5fmf]], [[4v1n]], [[4v1o]] – yTBP + DNA-directed RNA polymerase II + TFII + DNA<br /> | ||
| + | **[[6o9l]], [[6gym]], [[6gyl]], [[6gyk]], [[6f44]], [[6f42]], [[6f41]], [[6f40]], [[6eu0]], [[6cnf]], [[6cnd]], [[6cnc]], [[6cnb]] – yTBP + DNA-directed RNA polymerase II + TFII + DNA – Cryo EM<br /> | ||
| + | |||
| + | * TBP in SAGA transcriptional complex | ||
| + | **[[6tbm]], [[6tb4]] – yTBP + SAGA – cryo EM<br /> | ||
}} | }} | ||
== References == | == References == | ||
<references/> | <references/> | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 09:32, 13 February 2020
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3D Structures of TATA-binding protein
Updated on 13-February-2020
References
- ↑ Caporaso N. Genetic susceptibility in the occupational setting: introduction to the workshop. Med Lav. 1995 May-Jun;86(3):199-206. PMID:7565278
- ↑ van Roon-Mom WM, Reid SJ, Faull RL, Snell RG. TATA-binding protein in neurodegenerative disease. Neuroscience. 2005;133(4):863-72. PMID:15916858 doi:http://dx.doi.org/10.1016/j.neuroscience.2005.03.024
- ↑ Juo ZS, Chiu TK, Leiberman PM, Baikalov I, Berk AJ, Dickerson RE. How proteins recognize the TATA box. J Mol Biol. 1996 Aug 16;261(2):239-54. PMID:8757291 doi:10.1006/jmbi.1996.0456
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