5h92

From Proteopedia

(Difference between revisions)

Revision as of 07:15, 19 February 2020

Crystal structure of the complex between maize Sulfite Reductase and ferredoxin in the form-3 crystal

Structural highlights

5h92 is a 3 chain structure with sequence from Maize. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	, , , ,
Related:	3b2f, 5h8v, 5h8y
Gene:	SIR (MAIZE), FDX1, pFD1 (MAIZE)
Activity:	Assimilatory sulfite reductase (ferredoxin), with EC number 1.8.7.1
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[SIR_MAIZE] Essential protein with sulfite reductase activity required in assimilatory sulfate reduction pathway during both primary and secondary metabolism and thus involved in development and growth.^[1] ^[2] ^[3] ^[4] DNA-binding protein that binds to both double-stranded and single-stranded DNA without significant sequence specificity to reversibly repress the transcriptional activity of chloroplast nucleoids by promoting DNA compaction and possibly regulate DNA replication.^[5] [FER1_MAIZE] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Publication Abstract from PubMed

The structure of the complex of maize sulfite reductase (SiR) and ferredoxin (Fd) has been determined by X-ray crystallography. Co-crystals of the two proteins prepared under different conditions were subjected to the diffraction analysis and three possible structures of the complex were solved. Although topological relationship of SiR and Fd varied in each of the structures, two characteristics common to all structures were found in the pattern of protein-protein interactions and positional arrangements of redox centres; (i) a few negative residues of Fd contact with a narrow area of SiR with positive electrostatic surface potential and (ii) [2Fe-2S] cluster of Fd and [4Fe-4S] cluster of SiR are in a close proximity with the shortest distance around 12 A. Mutational analysis of a total of seven basic residues of SiR distributed widely at the interface of the complex showed their importance for supporting an efficient Fd-dependent activity and a strong physical binding to Fd. These combined results suggest that the productive electron transfer complex of SiR and Fd could be formed through multiple processes of the electrostatic intermolecular interaction and this implication is discussed in terms of the multi-functionality of Fd in various redox metabolisms.

Structural and mutational studies of an electron transfer complex of maize sulfite reductase and ferredoxin.,Kim JY, Nakayama M, Toyota H, Kurisu G, Hase T J Biochem. 2016 Feb 26. pii: mvw016. PMID:26920048^[6]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Yonekura-Sakakibara K, Onda Y, Ashikari T, Tanaka Y, Kusumi T, Hase T. Analysis of reductant supply systems for ferredoxin-dependent sulfite reductase in photosynthetic and nonphotosynthetic organs of maize. Plant Physiol. 2000 Mar;122(3):887-94. PMID:10712553
↑ Sato N, Nakayama M, Hase T. The 70-kDa major DNA-compacting protein of the chloroplast nucleoid is sulfite reductase. FEBS Lett. 2001 Jan 5;487(3):347-50. PMID:11163356
↑ Hirasawa M, Nakayama M, Hase T, Knaff DB. Oxidation-reduction properties of maize ferredoxin: sulfite oxidoreductase. Biochim Biophys Acta. 2004 Feb 15;1608(2-3):140-8. PMID:14871491 doi:http://dx.doi.org/10.1016/j.bbabio.2003.11.004
↑ Sekine K, Fujiwara M, Nakayama M, Takao T, Hase T, Sato N. DNA binding and partial nucleoid localization of the chloroplast stromal enzyme ferredoxin:sulfite reductase. FEBS J. 2007 Apr;274(8):2054-69. Epub 2007 Mar 19. PMID:17371503 doi:http://dx.doi.org/EJB5748
↑ Sato N, Nakayama M, Hase T. The 70-kDa major DNA-compacting protein of the chloroplast nucleoid is sulfite reductase. FEBS Lett. 2001 Jan 5;487(3):347-50. PMID:11163356
↑ Kim JY, Nakayama M, Toyota H, Kurisu G, Hase T. Structural and mutational studies of an electron transfer complex of maize sulfite reductase and ferredoxin. J Biochem. 2016 Feb 26. pii: mvw016. PMID:26920048 doi:http://dx.doi.org/10.1093/jb/mvw016

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5h92"

@@ Line 1: / Line 1: @@
 ==Crystal structure of the complex between maize Sulfite Reductase and ferredoxin in the form-3 crystal==
-<StructureSection load='5h92' size='340' side='right' caption='[[5h92]], [[Resolution|resolution]] 2.08&Aring;' scene=''>
+<StructureSection load='5h92' size='340' side='right'caption='[[5h92]], [[Resolution|resolution]] 2.08&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5h92]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H92 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5H92 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5h92]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Maize Maize]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H92 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5H92 FirstGlance]. <br>
 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SRM:SIROHEME'>SRM</scene></td></tr>
 <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3b2f|3b2f]], [[5h8v|5h8v]], [[5h8y|5h8y]]</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 MAIZE]), FDX1, pFD1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 MAIZE])</td></tr>
 <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Assimilatory_sulfite_reductase_(ferredoxin) Assimilatory sulfite reductase (ferredoxin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.7.1 1.8.7.1] </span></td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5h92 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h92 OCA], [http://pdbe.org/5h92 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5h92 RCSB], [http://www.ebi.ac.uk/pdbsum/5h92 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5h92 ProSAT]</span></td></tr>
@@ Line 20: / Line 21: @@
 </div>
 <div class="pdbe-citations 5h92" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
+[[Category: Large Structures]]
+[[Category: Maize]]
 [[Category: Hase, T]]
 [[Category: Kurisu, G]]

5h92

From Proteopedia

Revision as of 07:15, 19 February 2020

Crystal structure of the complex between maize Sulfite Reductase and ferredoxin in the form-3 crystal

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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