Transcriptional activator
From Proteopedia
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</StructureSection> | </StructureSection> | ||
| - | == 3D Structures of transcriptional activator== | ||
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| - | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | ||
| - | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
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| - | *Gcn4 transcriptional activator see [[Gcn4]] | ||
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| - | *Gcn5 transcriptional activator | ||
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| - | **[[1e6i]] – yTA brododomain + histone H4 peptide - yeast<br /> | ||
| - | **[[1ygh]] – yTA histone acetyltransferase domain <br /> | ||
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| - | *C-Myb transcriptional activator; domains - DBD repeat 1 38-89; DBD repeat 2 90-141; DBD repeat 3 142-193; TAD 291-315 | ||
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| - | **[[1mse]], [[1msf]] – mTA DBD repeat 1,2 + DNA - NMR<br /> | ||
| - | **[[1mbe]], [[1mbf]] – mTA DBD repeat 1 + DNA – mouse - NMR<br /> | ||
| - | **[[1mbg]], [[1mbh]] – mTA DBD repeat 2 + DNA - NMR<br /> | ||
| - | **[[1mbj]], [[1mbk]] – mTA DBD repeat 3 + DNA - NMR<br /> | ||
| - | **[[1h88]] – mTA DBD repeat 1,2,3 + DNA + CCAAT/enhancer binding protein β<br /> | ||
| - | **[[1h89]] – mTA DBD repeat 1,2,3 + DNA + CAAT/enhancer binding protein β<br /> | ||
| - | **[[1guu]] – mTA DBD repeat 1 <br /> | ||
| - | **[[1gv2]] – mTA DBD repeat 2,3 <br /> | ||
| - | **[[1gv5]] – mTA DBD repeat 2 <br /> | ||
| - | **[[1gvd]] – mTA DBD repeat 2 (mutant) <br /> | ||
| - | **[[1idy]], [[1idz]] – mTA DBD repeat 3 (mutant) - NMR<br /> | ||
| - | **[[1sb0]], [[2agh]] – mTA TAD + CREB-binding protein - NMR<br /> | ||
| - | **[[2agh]] – mTA TAD + CREB-binding protein + HRX - NMR<br /> | ||
| - | **[[6dmx]], [[6dnq]] – mTA TAD + CREB-binding protein + BZIP factor <br /> | ||
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| - | *Psp operon transcriptional activator | ||
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| - | **[[2bjw]] – EcTA AAA domain – ''Escherichia coli''<br /> | ||
| - | **[[2bjv]], [[2c9c]], [[4qnm]] – EcTA AAA domain (mutant)<br /> | ||
| - | **[[2c96]] – EcTA AAA domain + ATP<br /> | ||
| - | **[[4qnr]] – EcTA AAA domain (mutant) + ATP<br /> | ||
| - | **[[4qos]] – EcTA AAA domain (mutant) + ADP<br /> | ||
| - | **[[2c98]] – EcTA AAA domain + ADP<br /> | ||
| - | **[[2c99]] – EcTA AAA domain + AMPPNP<br /> | ||
| - | **[[2vii]] – EcTA AAA domain + AMP + Mg<br /> | ||
| - | **[[5nss]] – EcTA AAA domain + RNAP subunits αββ'ω + DNA - Cryo EM<br /> | ||
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| - | *TenA transcriptional activator | ||
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| - | **[[1tyh]], [[1yaf]] – BsTA – ''Bacillus subtilis''<br /> | ||
| - | **[[2qzc]] – TA – ''Sulfolobus solfataricus''<br /> | ||
| - | **[[3no6]] – TA – ''Staphylococcus epidermidis''<br /> | ||
| - | **[[1yak]] – BsTA + pyrimidine derivative<br /> | ||
| - | **[[2qcx]] – BsTA (mutant) + pyrimidine derivative<br /> | ||
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| - | *LasR transcriptional activator or transcriptional regulator LasR | ||
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| - | **[[6mww]] – PaTA – ''Pseudomonas aeruginosa''<br /> | ||
| - | **[[2uv0]] – PaTA LBD residues 1-173<br /> | ||
| - | **[[3ix3]] – PaTA LBD + oxo-dodecanoyl-homoserine lactone<br /> | ||
| - | **[[3ix4]], [[3ix8]], [[3jpu]], [[6d6a]], [[6d6b]], [[6d6c]], [[6d6d]], [[6d6l]], [[6d6m]], [[6d6n]], [[6d6o]], [[6d6p]] – PaTA LBD + benzoate derivative<br /> | ||
| - | **[[6mwl]] – PaTA + oxothiolan derivative<br /> | ||
| - | **[[6mwh]] – PaTA + acetamide derivative<br /> | ||
| - | **[[4ng2]] – PaTA LBD + protein<br /> | ||
| - | **[[6mwz]] – PaTA (mutant) + peptide<br /> | ||
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| - | *CadC transcriptional activator; domains - DBD 1-107; periplasmic 188-512 | ||
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| - | **[[3ly7]], [[3lya]] – EcTA periplasmic domain <br /> | ||
| - | **[[3ly8]], [[3ly9]] – EcTA periplasmic domain (mutant)<br /> | ||
| - | **[[5ju7]] – EcTA DBD domain <br /> | ||
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| - | *CynR transcriptional activator | ||
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| - | **[[2hxr]] – EcTA LBD <br /> | ||
| - | **[[3hfu]] – EcTA LBD + N3<br /> | ||
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| - | *Mal-Rpel transcriptional activator | ||
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| - | **[[2v51]], [[2v52]] – mTA residues 16-41 + actin <br /> | ||
| - | **[[2yje]], [[2yjf]] – mTA Rpel domain + actin <br /> | ||
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| - | *Brg1 transcriptional activator | ||
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| - | **[[5ea1]] – hTA bromodomain - human<br /> | ||
| - | **[[3uvd]] – hTA bromodomain + pyrrolidone derivative <br /> | ||
| - | **[[5dkd]] – hTA bromodomain + pyridine derivative <br /> | ||
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| - | *VP30 transcriptional activator | ||
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| - | **[[2i8b]] – TA C terminal – Zaire ebolavirus<br /> | ||
| - | **[[3v7o]] – TA C terminal – Reston ebolavirus<br /> | ||
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| - | *TraR transcriptional activator | ||
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| - | **[[1v4r]] – AtTA N-terminal - ''Streptomyces'' - NMR <br /> | ||
| - | **[[1l3l]] – AtTA + pheromone + DNA – ''Agrobacterium tumefaciens'' <br /> | ||
| - | **[[1h0m]] – AtTA + auto-inducer + DNA <br /> | ||
| - | **[[5w1s]] – EcTA + RNAP subunits αββ'ω + PROD + DNA <br /> | ||
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| - | *Flagelar transcriptional activator | ||
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| - | **[[1g8e]] – EcTA FLHD<br /> | ||
| - | **[[2avu]] – EcTA FLHC+FLHD<br /> | ||
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| - | *TipA transcriptional activator | ||
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| - | **[[1ny9]] – SlTA antibiotic binding domain – ''Streptomyces lividans'' - NMR<br /> | ||
| - | **[[2mbz]], [[2mc0]] - SlTA antibiotic binding domain + thiopeptide - NMR<br /> | ||
| - | **[[2vz4]] – SlTA DBD + DNA<br /> | ||
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| - | *MtaN transcriptional activator | ||
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| - | **[[1r8d]], [[1jbg]] – BsTA N-terminal <br /> | ||
| - | **[[4p54]] – TA (mutant) - ''Helicobacter pylori'' <br /> | ||
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| - | *RfaH transcriptional activator | ||
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| - | **[[2oug]] – EcTA <br /> | ||
| - | **[[2lcl]] – EcTA C terminal - NMR<br /> | ||
| - | **[[5ond]] – EcTA (mutant) + DNA <br /> | ||
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| - | *SoxR transcriptional activator | ||
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| - | **[[2zhh]] – EcTA <br /> | ||
| - | **[[2zhg]] – EcTA + DNA<br /> | ||
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| - | *AmpR transcriptional activator | ||
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| - | **[[3kos]] – CfTA effector binding domain – ''Citrobacter freundii''<br /> | ||
| - | **[[3kot]] – CfTA effector binding domain (mutant)<br /> | ||
| - | **[[4wkm]] – CfTA effector binding domain + peptide<br /> | ||
| - | **[[5mmh]] – PaTA effector binding domain<br /> | ||
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| - | *GlxR transcriptional activator | ||
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| - | **[[4byy]] – CgTA – ''Corynebacterium glutamicum'' <br /> | ||
| - | **[[3r6s]], [[4cyd]] – CgTA + cAMP <br /> | ||
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| - | *OxyR transcriptional activator | ||
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| - | **[[3t22]], [[3ho7]], [[3uki]] – TA regulatory domain – ''Porphyromonas gingivalis'' <br /> | ||
| - | **[[3jvt]] – TA – ''Neiserria meningitidis'' <br /> | ||
| - | **[[4x6g]] – PaTA (mutant) <br /> | ||
| - | **[[4y0m]] – PaTA regulatory domain <br /> | ||
| - | **[[4xws]] – PaTA regulatory domain (mutant) <br /> | ||
| - | **[[5x0v]] – VvTA-2 regulatory domain - ''Vibrio vulnificus'' <br /> | ||
| - | **[[5x0q]], [[5b70]], [[5b7d]], [[5b7h]] – VvTA-2 regulatory domain (mutant)<br /> | ||
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| - | *PlcR transcriptional activator | ||
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| - | **[[4fsc]] – BtTA - ''Bacillus thuringiensis'' <br /> | ||
| - | **[[2qfc]] – BtTA + PAPR peptide <br /> | ||
| - | **[[3u3w]] – BtTA + DNA + PAPR peptide <br /> | ||
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| - | *VirB transcriptional activator | ||
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| - | **[[3vwb]], [[3w2a]], [[3w3c]] – TA core domain + DNA – ''Shigella flexneri''<br /> | ||
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| - | *MafA transcriptional activator | ||
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| - | **[[4eot]] – hTA DBD<br /> | ||
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| - | *CysB transcriptional activator | ||
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| - | **[[4gwo]], [[4gxa]], [[4lon]], [[4lp2]] – StTA C terminal – ''Salmonella typhimurium''<br /> | ||
| - | **[[4lq2]], [[4lq5]], [[4m4g]] – StTA C terminal + acetylserine<br /> | ||
| - | **[[1al3]] – TA cofactor binding domain – ''Klebsiella aerogenes''<br /> | ||
| - | **[[5z50]] – PaTA regulatory domain <br /> | ||
| - | **[[5z4y]] – PaTA NTD domain <br /> | ||
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| - | *HlyU transcriptional activator | ||
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| - | **[[4k2e]], [[4ooi]] – TA - ''Vibrio cholerae''<br /> | ||
| - | **[[3jth]] – VvTA <br /> | ||
| - | **[[5znx]] – TA + inhibitor - ''Vibrio vulnificus''<br /> | ||
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| - | *Aft2 transcriptional activator | ||
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| - | **[[4lmg]] – yTA + DNA<br /> | ||
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| - | *Cmpr transcriptional activator | ||
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| - | **[[5z49]] – TA effector-binding domain + ribulose bisphosphate – Synechococcus elongatus<br /> | ||
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| - | *Mga transcriptional activator | ||
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| - | **[[5way]] – TA – Streptococcus pneumoniae<br /> | ||
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| - | *RhaR transcriptional activator | ||
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| - | **[[5u9e]], [[5u93]] – TA regulatory domain – Bacteria latreille<br /> | ||
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| - | *Spt7 transcriptional activator | ||
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| - | **[[6t9k]], [[6t9i]] – yTA in SAGA – Cryo EM<br /> | ||
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| - | }} | ||
== References == | == References == | ||
<references/> | <references/> | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 09:35, 4 March 2020
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References
- ↑ Titz B, Thomas S, Rajagopala SV, Chiba T, Ito T, Uetz P. Transcriptional activators in yeast. Nucleic Acids Res. 2006 Feb 7;34(3):955-67. Print 2006. PMID:16464826 doi:http://dx.doi.org/34/3/955
