User:Ona Ambrozaite/Sandbox 1
From Proteopedia
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<Structure 2R73 scene='83/837887/Trichosurin1_/2'> | <Structure 2R73 scene='83/837887/Trichosurin1_/2'> | ||
| - | == | + | == Introduction == |
Trichosurin is one of three predominant proteins found in the milk whey of the common brushtail possum ''Trichosurus vulpecula''. It belongs to the lipocalin superfamily and is an extracellular protein (17–25 kDa) that can bind and transport small lipophilic molecules. The binding pocket is a crucial factor in the selectivity of binding, as is access to the binding pocket that is controlled by side chains of the 22 residues that line the binding pocket and form a loop between β-strands at one end of the lipocalin β-barrel. | Trichosurin is one of three predominant proteins found in the milk whey of the common brushtail possum ''Trichosurus vulpecula''. It belongs to the lipocalin superfamily and is an extracellular protein (17–25 kDa) that can bind and transport small lipophilic molecules. The binding pocket is a crucial factor in the selectivity of binding, as is access to the binding pocket that is controlled by side chains of the 22 residues that line the binding pocket and form a loop between β-strands at one end of the lipocalin β-barrel. | ||
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== Structure == | == Structure == | ||
| - | [[Image:Trichosurin_for_ProtPedia.png|300px| | + | [[Image:Trichosurin_for_ProtPedia.png|300px|center|thumb| Structure of the Possum Milk Whey Lipocalin Trichosurin at pH 8.2]] |
The fully functional trichosurin consists of two monomers joining to form a dimer of identical eight-stranded, anti-parallel β-barrels. The study of lipocalin dimerization modes has shown six variations in orientation, with trichosurin adding a seventh one to the list. Overall, there are four main chains (A, B, C, and D), in the dimer, with each chain a length of 166 amino acids. There is also a signal sequence at the N-terminus of the chain that is cleaved before a fully functional molecule is formed. Currently, there are two crystal structures of trichosurin that can be found at RCSB, one determined at pH 8.2 and another at a lower pH of 4.6. | The fully functional trichosurin consists of two monomers joining to form a dimer of identical eight-stranded, anti-parallel β-barrels. The study of lipocalin dimerization modes has shown six variations in orientation, with trichosurin adding a seventh one to the list. Overall, there are four main chains (A, B, C, and D), in the dimer, with each chain a length of 166 amino acids. There is also a signal sequence at the N-terminus of the chain that is cleaved before a fully functional molecule is formed. Currently, there are two crystal structures of trichosurin that can be found at RCSB, one determined at pH 8.2 and another at a lower pH of 4.6. | ||
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== Structure and Function == | == Structure and Function == | ||
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The binding site is found in the centre of the β-barrel and can be occupied by water and isopropanol molecules from the corresponding crystallization medium. The protein was also crystallized with 2-naphthol and 4-ethylphenol that were bound in the centre of the β-barrel. The presence of such phenolic compounds provides clues to the function of trichosurin- . | The binding site is found in the centre of the β-barrel and can be occupied by water and isopropanol molecules from the corresponding crystallization medium. The protein was also crystallized with 2-naphthol and 4-ethylphenol that were bound in the centre of the β-barrel. The presence of such phenolic compounds provides clues to the function of trichosurin- . | ||
| - | Overall, trichosurin follows the general lipocalin superfamily fold pattern by having a β-barrel, several extended loop regions between β strands that close the ends of the barrel, and a major conserved feature of the lipocalin fold- a disulfide bond- that ties the C-terminus to a specific β-strand. | + | Overall, trichosurin follows the general lipocalin superfamily fold pattern by having a β-barrel, several extended loop regions between β strands that close the ends of the barrel, a helix near the C-terminus which is common to all lipocalins, and a major conserved feature of the lipocalin fold- a disulfide bond- that ties the C-terminus to a specific β-strand. |
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| + | Trichosurin also displays a large amount of hydrophilic surface area, with areas between the helix, the outside of the barrel, and the dimer interface where more polar ligands such as 2-naphthol can bind since those spaces have more hydrophilicity and negative/positive potential surface areas. | ||
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== Evolutionarily Related Proteins == | == Evolutionarily Related Proteins == | ||
Revision as of 22:04, 6 March 2020
Trichosurin
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