This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5bvo
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Fragment-based discovery of potent and selective DDR1/2 inhibitors== | ==Fragment-based discovery of potent and selective DDR1/2 inhibitors== | ||
| - | <StructureSection load='5bvo' size='340' side='right' caption='[[5bvo]], [[Resolution|resolution]] 1.98Å' scene=''> | + | <StructureSection load='5bvo' size='340' side='right'caption='[[5bvo]], [[Resolution|resolution]] 1.98Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5bvo]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BVO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5BVO FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5bvo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BVO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5BVO FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4VE:N-(5-{(1S)-1-[(5-FLUORO-1,3-BENZOXAZOL-2-YL)AMINO]ETHYL}-2-METHYLPHENYL)IMIDAZO[1,2-A]PYRIDINE-3-CARBOXAMIDE'>4VE</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4VE:N-(5-{(1S)-1-[(5-FLUORO-1,3-BENZOXAZOL-2-YL)AMINO]ETHYL}-2-METHYLPHENYL)IMIDAZO[1,2-A]PYRIDINE-3-CARBOXAMIDE'>4VE</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DDR1, CAK, EDDR1, NEP, NTRK4, PTK3A, RTK6, TRKE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Receptor_protein-tyrosine_kinase Receptor protein-tyrosine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.10.1 2.7.10.1] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Receptor_protein-tyrosine_kinase Receptor protein-tyrosine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.10.1 2.7.10.1] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5bvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bvo OCA], [http://pdbe.org/5bvo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5bvo RCSB], [http://www.ebi.ac.uk/pdbsum/5bvo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5bvo ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5bvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bvo OCA], [http://pdbe.org/5bvo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5bvo RCSB], [http://www.ebi.ac.uk/pdbsum/5bvo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5bvo ProSAT]</span></td></tr> | ||
| Line 17: | Line 18: | ||
</div> | </div> | ||
<div class="pdbe-citations 5bvo" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 5bvo" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Epithelial discoidin domain-containing receptor|Epithelial discoidin domain-containing receptor]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Human]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Receptor protein-tyrosine kinase]] | [[Category: Receptor protein-tyrosine kinase]] | ||
[[Category: Berdini, V]] | [[Category: Berdini, V]] | ||
Revision as of 11:02, 18 March 2020
Fragment-based discovery of potent and selective DDR1/2 inhibitors
| |||||||||||
Categories: Human | Large Structures | Receptor protein-tyrosine kinase | Berdini, V | Buck, I | Carr, M | Cleasby, A | Coyle, J | Curry, J | Day, J | Hearn, K | Iqbal, A | Kirsten, T | Lee, L | Martins, V | Mortenson, P | Munck, J | Murray, C | Page, L | Patel, S | Roomans, S | Saxty, G | Ddr1 | Fragment | Transferase
