Virus coat protein
From Proteopedia
(Difference between revisions)
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</StructureSection> | </StructureSection> | ||
| - | ==3D structures of virus coat proteins== | ||
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| - | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | ||
| - | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
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| - | *Virus coat protein of parvovirus | ||
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| - | **[[1s58]] - VCP – human parvovirus<br /> | ||
| - | **[[4qc8]] - VCP Vp2 – bovine parvovirus<br /> | ||
| - | **[[1k3v]] – VCP Vp2 – pig parvovirus<br /> | ||
| - | **[[2cas]] – cpvVCP - canine parvovirus<br /> | ||
| - | **[[6oas]] – cpvVCP - Cryo EM<br /> | ||
| - | **[[1ijs]], [[1p5w]], [[1p5y]] – cpvVCP (mutant) + DNA<br /> | ||
| - | **[[4dpv]] - cpvVCP + DNA | ||
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| - | *Virus coat protein of HIV | ||
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| - | **[[1afv]], [[1e6j]] – HivVCP + antibody – HIV-1<br /> | ||
| - | **[[3gv2]], [[3h47]], [[3h4e]] – HivVCP (mutant) <br /> | ||
| - | **[[1aum]], [[1a8o]], [[1a43]], [[2ont]], [[3lry]], [[3mge]] – HivVCP C terminal<br /> | ||
| - | **[[2jyl]], [[2jyg]] - HivVCP C terminal (mutant) – NMR<BR /> | ||
| - | **[[3dph]], [[3ds2]], [[3ds5]], [[3dtj]] - HivVCP C terminal (mutant) <br /> | ||
| - | **[[2buo]] - HivVCP C terminal + inhibitor of capsid assembly<br /> | ||
| - | **[[2xt1]], [[2xv6]], [[2xxm]] - HivVCP C terminal + camelid VHH 9<br /> | ||
| - | **[[3ds0]], [[3ds1]], [[3ds3]], [[3ds4]] - HivVCP C terminal (mutant) + inhibitor of capsid assembly<br /> | ||
| - | **[[1m9c]], [[1m9d]] - HivVCP N terminal + cyclophilin<br /> | ||
| - | **[[1m9e]], [[1m9f]], [[1m9x]], [[1m9y]] - HivVCP N terminal (mutant)+ cyclophilin<br /> | ||
| - | **[[2x82]], [[2x83]] – VCP N terminal – HIV-2 | ||
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| - | *Virus coat protein of Rous sarcoma virus | ||
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| - | **[[1d1d]] – RsvVCP – Rous sarcoma virus – NMR<BR /> | ||
| - | **[[1em9]], [[1p7n]] – RsvVCP N terminal<br /> | ||
| - | **[[1eoq]], [[3g1g]], [[3g1i]], [[3g21]], [[2x8q]] - RsvVCP C terminal<br /> | ||
| - | **[[3g0v]], [[3g26]], [[3g28]], [[3g29]] - RsvVCP C terminal (mutant) <br /> | ||
| - | **[[3tir]] – RsvVCP P27 | ||
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| - | *Virus coat protein of rotavirus | ||
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| - | **[[1qhd]] – brvVCP Vp6 – bovine rotavirus<br /> | ||
| - | **[[3kz4]] - brvVCP Vp2<br /> | ||
| - | **[[4v7q]] - rrVCP Vp4 – rhesus rotavirus – Cryo EM<br /> | ||
| - | **[[2p3i]], [[2p3k]] - rrVCP Vp4 Vp8* domain <br /> | ||
| - | **[[2p3j]] – rrVCP Vp4 Vp8* domain (mutant) <br /> | ||
| - | **[[1kri]] - rrVCP Vp4 Vp8* domain – NMR<br /> | ||
| - | **[[2b4h]], [[2b4i]], [[1slq]] - Vp4 Vp5* domain <br /> | ||
| - | **[[3gzt]], [[3gzu]] – rrVCP Vp7 – Cryo EM<BR /> | ||
| - | **[[1kqr]], [[3tb0]] – rrVCP Vp4 Vp8* domain + neuraminic acid derivative <BR /> | ||
| - | **[[3tay]] – prVCP Vp4 Vp8* domain (mutant) + neuraminic acid derivative <BR /> | ||
| - | **[[2i2s]] - VCP Vp4 Vp8* domain – pig rotavirus<br /> | ||
| - | **[[3sis]], [[3sit]] - prVCP Vp4 Vp8* domain + glycan<br /> | ||
| - | **[[2dwr]] - hrvVCP Vp4 Vp8* domain – human rotavirus<br /> | ||
| - | **[[4drr]], [[4drv]], [[4ds0]] - hrvVCP Vp4 Vp8* domain + antigen | ||
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| - | *Virus coat protein of hepatitis virus | ||
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| - | **[[1qgt]], [[2qij]] – hbvVCP – hepatitis B virus<br /> | ||
| - | **[[3kxs]] – hbvVCP (mutant) <br /> | ||
| - | **[[2ztn]], [[3ggq]], [[2zzq]], [[3rkc]] - hevVCP – hepatitis E virus<br /> | ||
| - | **[[3rkd]] – hevVCP + antibody<br /> | ||
| - | **[[3iyo]] – hevVCP – Cryo EM<BR /> | ||
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| - | *Virus coat protein of norovirus | ||
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| - | **[[1ihm]], [[3by1]], [[3by2]], [[3d26]], [[2zl5]], [[2zl6]], [[2zl7]] – NvVCP – Norwalk virus<br /> | ||
| - | **[[3onu]], [[3ony]], [[2obr]], [[2obs]], [[2obt]], [[3lq6]], [[3lqe]], [[3ry8]] – NvVCP P domain<br /> | ||
| - | **[[3pa1]], [[3pa2]], [[3q38]], [[3q39]], [[3q3a]], [[3q6q]], [[3q6r]], [[3asp]], [[3asq]], [[3asr]], [[3ass]], [[3ast]] - NvVCP P domain + antigen<br /> | ||
| - | **[[3v7a]] – NvVCP P domain + antibody<br /> | ||
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| - | *Virus coat protein of sindbis virus | ||
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| - | **[[2snv]], [[2snw]], [[1svp]], [[1kxa]], [[1wyk]], [[3muu]] – svVCP – sindbis virus<br /> | ||
| - | **[[1svp]], [[1kxb]], [[1kxc]], [[1kxd]], [[1kxe]], [[1kxf]] – svVCP (mutant)<br /> | ||
| - | **[[1ld4]], [[3j0f]], [[3muw]], [[1z8y]] – svVCP + envelope proteins – Cryo EM<BR /> | ||
| - | **[[3muw]] - svVCP – Cryo EM<br /> | ||
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| - | *Virus coat protein of zika virus | ||
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| - | **[[5ygh]], [[5z0r]] – zvVCP – zika virus <br /> | ||
| - | **[[6c44]] – zvVCP - NMR<br /> | ||
| - | **[[5ire]] – zvVCP – Cryo EM<br /> | ||
| - | **[[5z0v]] – zvVCP (mutant) <br /> | ||
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| - | *Virus coat protein of plant viruses | ||
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| - | **[[1js9]], [[1yc6]] – bmvVCP – brome mosaic virus<br /> | ||
| - | **[[3j7l]], [[3j7m]], [[3j7n]] – bmvVCP – cryo EM<br /> | ||
| - | **[[1f15]] – VCP – cucumber mosaic virus<br /> | ||
| - | **[[6mrl]] – VCP – cucumber leaf spot virus - Cryo EM<br /> | ||
| - | **[[1auy]], [[1w39]] – tumvVCP – turnip yellow mosaic virus<br /> | ||
| - | **[[6t34]] – tumvVCP – Cryo EM<BR /> | ||
| - | **[[3zxa]] - tcvVCP – turnip crinkle virus<br /> | ||
| - | **[[3zx8]], [[3zx9]] – tcvVCP – Cryo EM<BR /> | ||
| - | **[[5a79]] – VCP – barley stripe mosaic virus – cryo EM<br /> | ||
| - | **[[6scl]] – VCP – barley yellow dwarf virus – Cryo EM<br /> | ||
| - | **[[5a2t]] – VCP – bamboo mosaic virus – cryo EM<br /> | ||
| - | **[[1f2n]] - VCP – rice yellow mosaic virus<br /> | ||
| - | **[[1uf2]] – VCP + proteins – rice dwarf virus<br /> | ||
| - | **[[1a34]], [[2tmv]], [[1ei7]] – stmvVCP + RNA - satellite tobacco mosaic virus<br /> | ||
| - | **[[3j06]] - stmvVCP + RNA – Cryo EM<BR /> | ||
| - | **[[2om3]], [[2xea]], [[4udv]] – stmvVCP – Cryo EM<BR /> | ||
| - | **[[3kml]] – stmvVCP (mutant) <br /> | ||
| - | **[[2buk]], [[1vtm]], [[4nia]], [[4oq8]], [[4oq9]] - stnvVCP - satellite tobacco necrosis virus<br /> | ||
| - | **[[6i5a]], [[6sae]], [[6sag]] – tmvVCP - tobacco mosaic virus - Cryo EM<br /> | ||
| - | **[[1a6c]] - VCP - tobacco ringspot virus<br /> | ||
| - | **[[4y6t]], [[4y6x]] – VCP – tobacco streak virus<br /> | ||
| - | **[[4v4m]] – VCP – tobacco necrosis satellite virus<br /> | ||
| - | **[[1e57]] – VCP – Physalis mottle virus<br /> | ||
| - | **[[2izw]] - VCP – ryegrass mottle virus<br /> | ||
| - | **[[1opo]] - VCP – carnation mottle virus<br /> | ||
| - | **[[3jb8]] – VCP - maize chlorotic mottle virus<br /> | ||
| - | **[[4v5t]], [[4v5w]] – VCP – grapevine fanleaf virus<br /> | ||
| - | **[[1ny7]], [[1cwp]], [[2bfu]] – VCP – cowpea mosaic virus<br /> | ||
| - | **[[1za7]] - VCP (mutant) – cowpea chlorotic mottle virus<br /> | ||
| - | **[[1pgl]], [[1pgw]], [[1bmv]] – VCP + RNA – bean pod mottle virus<br /> | ||
| - | **[[6qcc]] – VCP – broad bean stain virus – Cryo EM<br /> | ||
| - | **[[2tbv]] – VCP – tomato bushy stunt virus<br /> | ||
| - | **[[1laj]] – VCP + RNA – tomato aspermy virus<br /> | ||
| - | **[[1smv]] – VCP – sesbania mosaic virus<br /> | ||
| - | **[[1stm]], [[4v99]] – VCP - satellite panicum mosaic virus<br /> | ||
| - | **[[4sbv]] – VCP – southern bean mosaic virus<br /> | ||
| - | **[[6mrm]] – VCP - red clover necrotic mosaic virus - Cryo EM<br /> | ||
| - | **[[6f2s]] – VCP - ageratum yellow vein virus - Cryo EM<br /> | ||
| - | **[[6ek5]] – VCP - African cassava mosaic virus - Cryo EM<br /> | ||
| - | **[[1m1c]] – VCP – yeast L-A virus<br /> | ||
| - | **[[3iym]] – VCP – Penicillium stoloniferum virus – Cryo EM<BR /> | ||
| - | **[[6hxx]] – pvVCP – potato virus – Cryo EM<BR /> | ||
| - | **[[6sco]] – pvVCP + RNA – Cryo EM<br /> | ||
| - | **[[6hxx]] – VCP – potato leaf roll virus – Cryo EM<BR /> | ||
| - | **[[5fn1]] – VCP – pepino mosaic virus – Cryo EM<br /> | ||
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| - | *Virus coat protein by fiber diffraction | ||
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| - | **[[1cgm]] – VCP – cucumber green mottle virus<br /> | ||
| - | **[[1rmv]] - VCP + RNA – fibgrass mosaic virus<br /> | ||
| - | **[[1pfi]], [[2ifm]] – VCP – Pf1 virus<br /> | ||
| - | **[[1vtm]] - stmvVCP <br /> | ||
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| - | *Virus coat protein of other viruses | ||
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| - | **[[1qrj]] – htlvVCP – Human T-cell lymphotrophic virus – NMR<BR /> | ||
| - | **[[1g03]] - htlvVCP N terminal - NMR<BR /> | ||
| - | **[[1dzl]] – hpvVCP L1 (mutant) – Human papillomavirus<br /> | ||
| - | **[[2r5h]], [[2r5i]], [[2r5j]], [[2r5k]] - hpvVCP L1<br /> | ||
| - | **[[1pov]] – VCP – poliovirus<br /> | ||
| - | **[[1no7]] – VCP Vp5 – Human herpes simplex virus<br /> | ||
| - | **[[6rjf]] – VCP – Echovirus 1 - Cryo EM<BR /> | ||
| - | **[[2mev]], [[1mec]] – VCP – mengo virus<br /> | ||
| - | **[[1bvp]] – VCP – bluetongue virus VP7<br /> | ||
| - | **[[1nov]] – VCP – Nodamura virus<br /> | ||
| - | **[[1mvm]], [[1z1c]] – mvVCP + DNA – minute virus<br /> | ||
| - | **[[2xgk]] – mvVCP Vp2 (mutant) <br /> | ||
| - | **[[1bbt]], [[1fod]], [[1fmd]], [[1qgc]] – fmdvVCP – foot and mouth disease virus<br /> | ||
| - | **[[2wv4]], [[2wv5]] – fmdvVCP Vp1 + picornain<br /> | ||
| - | **[[1c8d]], [[1c8h]] - VCP – canine panleukopenia virus<br /> | ||
| - | **[[2bbv]] – VCP + RNA – black beetle virus<br /> | ||
| - | **[[1sva]] – svVCP – simian virus 40<br /> | ||
| - | **[[3bwq]], [[3bwr]] – svVCP Vp1<br /> | ||
| - | **[[2kgf]] – mpmvVCP N-terminal – Mason-Pfizer monkey virus<br /> | ||
| - | **[[4ard]] – mpmvVCP P27 – Cryo EM<BR /> | ||
| - | **[[1sid]], [[1sie]], [[1vpn]], [[1vps]], [[1cn3]] – VCP – murine polyomavirus<br /> | ||
| - | **[[3s7v]] - pvVCP Vp1 – polyomavirus<br /> | ||
| - | **[[3s7x]] - pvVCP Vp1 (mutant) <br /> | ||
| - | **[[1vcp]], [[1vcq]] – sfvVCP – semliki forest virus<br /> | ||
| - | **[[1dyl]] – sfvVCP – Cryo EM<br /> | ||
| - | **[[2yew]] - VCP + envelope glycoprotein – Barmah forest virus - Cryo EM<BR /> | ||
| - | **[[1dnv]] – VCP – Galleria mellonella densovirus<br /> | ||
| - | **[[2eia]], [[1eia]] – VCP – equine infectious anemia virus<br /> | ||
| - | **[[1ep5]], [[1ep6]] – eevVCP C terminal – equine encephalitis virus<br /> | ||
| - | **[[3j0c]], [[3j0g]] - eevVCP C terminal + envelope glycoprotein – Cryo EM<BR /> | ||
| - | **[[3ve6]] – eevVCP NLS + importin<br />> | ||
| - | **[[3iyj]] - VCP L1 – bovine papillomavirus – Cryo EM<BR /> | ||
| - | **[[1f8v]] – VCP + RNA – pariacoto virus<br /> | ||
| - | **[[2r18]], [[2z7j]] – VCP Vp3 – birnavirus<br /> | ||
| - | **[[2vf1]] – VCP – rabbit picobirnavirus<br /> | ||
| - | **[[4agj]], [[4agk]], [[4uon]] – VCP – aura virus<br /> | ||
| - | **[[3j2w]] – VCP + E1 + E2 – chikungunya virus – Cryo EM<br /> | ||
| - | **[[1jew]] – VCP + receptor – coxsackievvirus – Cryo EM<BR /> | ||
| - | **[[1fn9]] – VCP sigma 3 – reovirus<br /> | ||
| - | **[[3iyl]] – VCP Vp4+Vp1+Vp3 – grass carp virus – Cryo EM<BR /> | ||
| - | **[[1lp3]], [[2g8g]], [[2qa0]], [[3ra2]], [[3ra4]], [[3ra8]], [[3ra9]], [[3raa]], [[3ng9]] – aavVCP – adeno-associated virus<br /> | ||
| - | **[[3kic]], [[3kie]], [[4v86]], [[3shm]], [[3ux1]] – aavVCP Vp1<br /> | ||
| - | **[[3j1s]] - aavVCP Vp1 + antibody<br /> | ||
| - | **[[2gh8]] – VCP – San Miguel sea lion virus<br /> | ||
| - | **[[5tiq]], [[5tip]] – PbcvVCP – Parmecium bursaria chlorella virus<br /> | ||
| - | **[[1m4x]] – PbcvVCP – Cryo EM<BR /> | ||
| - | **[[1ohf]] – VCP – Nudaurelia capensis omega virus<br /> | ||
| - | **[[2p5p]] – VCP domain III – West Nile virus<br /> | ||
| - | **[[3cnf]] – VCP Vp1+Vp3 – polyhedrosis virus – Cryo EM<BR /> | ||
| - | **[[2v4x]] – VCP N terminal – sheep retrovirus<br /> | ||
| - | **[[3fbm]] – VCP Vp2 – avian infectious bursal disease virus<br /> | ||
| - | **[[2qqp]] – VCP + RNA – Providence virus<br /> | ||
| - | **[[3ide]] – VCP Vp2 – infectious pancreatic necrosis virus<br /> | ||
| - | **[[4rft]], [[4rfu]], [[4wiz]] - VCP – grouper nervous necrosis virus<br /> | ||
| - | **[[3lob]], [[4fte]], [[4fts]] – fhvVCP (mutant) + RNA – flock house virus<br /> | ||
| - | **[[4fsj]], [[4ftb]] - fhvVCP + RNA<br /> | ||
| - | **[[3nap]] – VCP – triatoma virus<br /> | ||
| - | **[[2xgu]], [[2xgv]] – relvVCP N terminal – rabbit endogenous lentivirus<br /> | ||
| - | **[[3zue]] – VCP Vp60 - rabbit hemorrhagic disease virus – Cryo EM<BR /> | ||
| - | **[[2xgy]] – relvVCP N terminal + cyclophilin<br /> | ||
| - | **[[3r0r]] – VCP – pig circovirus<br /> | ||
| - | **[[1mqt]] – VCP – swine vesicular disease virus<br /> | ||
| - | **[[3izx]] – bmcvVCP Vp3 + structural protein 5 – Bombyx mori cypovirus – Cryo EM<BR /> | ||
| - | **[[3j17]] - bmcvVCP Vp3 Vp5<br /> | ||
| - | **[[3vbf]], [[3vbh]], [[3vbo]], [[3vbr]], [[3vbs]], [[3vbu]] – VCP – human enterovirus<br /> | ||
| - | **[[3s6p]] – VCP – Helicoverpa armigera stunt virus<br /> | ||
| - | **[[3m8l]] – FcVCP – feline calcivirus<br /> | ||
| - | **[[6gsi]] – FcVCP + Vp2 + junctional adhesion molecule– Cryo EM<br /> | ||
| - | **[[1fpv]], [[1c8e]], [[1c8f]], [[1c8g]] – VCP – feline panleukopenia virus<br /> | ||
| - | **[[6ojn]] – VCP - singapore grouper iridovirus - Cryo EM<br /> | ||
| - | **[[6rj0]] – VCP – Atlantic cod nervous necrosis virus – Cryo EM<br /> | ||
| - | **[[5tc1]] – Epms2VCP + maturation protein + phage MS2 genome – Enterobacteria phage MS2<br /> | ||
| - | **[[4zor]] – Epms2VCP <br /> | ||
| - | **[[6msf]], [[7msf]] – Epms2VCP + RNA<br /> | ||
| - | **[[5kip]] – VCP – phage Qbeta<br /> | ||
| - | **[[3j9x]] – VCP – Sulfolobus iselandicus virus <br /> | ||
| - | **[[6tuq]] – PvVCP - Peudomonas virus PF1 - Cryo EM<br /> | ||
| - | **[[6tup]] – PvVCP + DNA - Cryo EM<br /> | ||
| - | **[[6itb]], [[6itf]] – VCP β - flock house virus - Cryo EM<br /> | ||
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| - | }} | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 07:23, 27 March 2020
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