5cva

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==Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a1a2a1 of type I collagen==
==Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a1a2a1 of type I collagen==
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<StructureSection load='5cva' size='340' side='right' caption='[[5cva]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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<StructureSection load='5cva' size='340' side='right'caption='[[5cva]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5cva]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CVA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CVA FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5cva]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CVA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CVA FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">COL9A1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN]), COL9A2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN]), COL9A3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cva FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cva OCA], [http://pdbe.org/5cva PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cva RCSB], [http://www.ebi.ac.uk/pdbsum/5cva PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cva ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cva FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cva OCA], [http://pdbe.org/5cva PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cva RCSB], [http://www.ebi.ac.uk/pdbsum/5cva PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cva ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/CO1A2_HUMAN CO1A2_HUMAN]] Type I collagen is a member of group I collagen (fibrillar forming collagen). [[http://www.uniprot.org/uniprot/CO1A1_HUMAN CO1A1_HUMAN]] Type I collagen is a member of group I collagen (fibrillar forming collagen).
[[http://www.uniprot.org/uniprot/CO1A2_HUMAN CO1A2_HUMAN]] Type I collagen is a member of group I collagen (fibrillar forming collagen). [[http://www.uniprot.org/uniprot/CO1A1_HUMAN CO1A1_HUMAN]] Type I collagen is a member of group I collagen (fibrillar forming collagen).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Collagen plays a fundamental role in all known metazoans. In collagens three polypeptides form a unique triple-helical structure with a one-residue stagger to fit every third glycine residue in the inner core without disturbing the poly-proline type II helical conformation of each chain. There are homo- and hetero-trimeric types of collagen consisting of one, two or three distinct chains. Thus there must be mechanisms that control composition and stagger during collagen folding. Here, we uncover the structural basis for both chain selection and stagger formation of a collagen molecule. Three distinct chains (alpha1, alpha2 and alpha3) of the non-collagenous domain 2 (NC2) of type IX collagen are assembled to guide triple-helical sequences in the leading, middle and trailing positions. This unique domain opens the door for generating any fragment of collagen in its native composition and stagger.
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Structural insight for chain selection and stagger control in collagen.,Boudko SP, Bachinger HP Sci Rep. 2016 Nov 29;6:37831. doi: 10.1038/srep37831. PMID:27897211<ref>PMID:27897211</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5cva" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Collagen 3D structures|Collagen 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
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[[Category: Large Structures]]
[[Category: Bachinger, H P]]
[[Category: Bachinger, H P]]
[[Category: Boudko, S P]]
[[Category: Boudko, S P]]

Revision as of 10:25, 1 April 2020

Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a1a2a1 of type I collagen

PDB ID 5cva

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