5cy8
From Proteopedia
(Difference between revisions)
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==Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryze, in complex with fragment 244== | ==Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryze, in complex with fragment 244== | ||
| - | <StructureSection load='5cy8' size='340' side='right' caption='[[5cy8]], [[Resolution|resolution]] 2.38Å' scene=''> | + | <StructureSection load='5cy8' size='340' side='right'caption='[[5cy8]], [[Resolution|resolution]] 2.38Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5cy8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CY8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CY8 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5cy8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanor Xanor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CY8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CY8 FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=56V:(3R)-2,3-DIHYDRO[1,3]THIAZOLO[3,2-A]BENZIMIDAZOL-3-OL'>56V</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=56V:(3R)-2,3-DIHYDRO[1,3]THIAZOLO[3,2-A]BENZIMIDAZOL-3-OL'>56V</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5cp0|5cp0]], [[5cpd|5cpd]], [[5cvk|5cvk]], [[5cvp|5cvp]], [[5cvq|5cvq]], [[5cwx|5cwx]], [[5cwy|5cwy]], [[5cx0|5cx0]], [[5cxj|5cxj]], [[5cy7|5cy7]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5cp0|5cp0]], [[5cpd|5cpd]], [[5cvk|5cvk]], [[5cvp|5cvp]], [[5cvq|5cvq]], [[5cwx|5cwx]], [[5cwy|5cwy]], [[5cx0|5cx0]], [[5cxj|5cxj]], [[5cy7|5cy7]]</td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">def, XOO1075 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=291331 XANOR])</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cy8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cy8 OCA], [http://pdbe.org/5cy8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cy8 RCSB], [http://www.ebi.ac.uk/pdbsum/5cy8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cy8 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cy8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cy8 OCA], [http://pdbe.org/5cy8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cy8 RCSB], [http://www.ebi.ac.uk/pdbsum/5cy8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cy8 ProSAT]</span></td></tr> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Peptide deformylase]] | [[Category: Peptide deformylase]] | ||
| + | [[Category: Xanor]] | ||
[[Category: Kang, L W]] | [[Category: Kang, L W]] | ||
[[Category: Ngo, H P.T]] | [[Category: Ngo, H P.T]] | ||
Revision as of 10:29, 1 April 2020
Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryze, in complex with fragment 244
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