This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5d3i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
 +
==Crystal structure of the SSL3-TLR2 complex==
==Crystal structure of the SSL3-TLR2 complex==
-
<StructureSection load='5d3i' size='340' side='right' caption='[[5d3i]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
+
<StructureSection load='5d3i' size='340' side='right'caption='[[5d3i]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5d3i]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5D3I FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5d3i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice] and [http://en.wikipedia.org/wiki/Staa8 Staa8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5D3I FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PCW:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PCW</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PCW:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PCW</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5d3d|5d3d]]</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5d3d|5d3d]]</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5d3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d3i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=5d3i RCSB], [http://www.ebi.ac.uk/pdbsum/5d3i PDBsum]</span></td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Tlr2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice]), SAOUHSC_00386 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=93061 STAA8])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5d3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d3i OCA], [http://pdbe.org/5d3i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5d3i RCSB], [http://www.ebi.ac.uk/pdbsum/5d3i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5d3i ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
Line 17: Line 19:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 5d3i" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Toll-like Receptor 3D structures|Toll-like Receptor 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Lk3 transgenic mice]]
 +
[[Category: Staa8]]
[[Category: Feitsma, L J]]
[[Category: Feitsma, L J]]
[[Category: Huizinga, E G]]
[[Category: Huizinga, E G]]
Line 34: Line 43:
[[Category: Ssl]]
[[Category: Ssl]]
[[Category: Ssl3]]
[[Category: Ssl3]]
-
[[Category: Superantigen-like protein]]
 
[[Category: Superantigen]]
[[Category: Superantigen]]
 +
[[Category: Superantigen-like protein]]
[[Category: Tlr2]]
[[Category: Tlr2]]
[[Category: Tlr6]]
[[Category: Tlr6]]
[[Category: Toll-like receptor 2]]
[[Category: Toll-like receptor 2]]

Revision as of 10:35, 1 April 2020

Crystal structure of the SSL3-TLR2 complex

PDB ID 5d3i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools