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Spike protein

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Line 19: Line 19:
* Human virus spike protein
* Human virus spike protein
-
**[[5wrg]], [[5xlr]] – hscvSpi – human SARS coronavirus – Cryo EM <br />
+
**[[5wrg]], [[5xlr]] – hscvSpi – human SARS-CoV – Cryo EM <br />
**[[6crv]], [[6crw]], [[6crx]], [[6crz]], [[6cs0]], [[6cs1]] – hscvSpi (mutant) – Cryo EM <br />
**[[6crv]], [[6crw]], [[6crx]], [[6crz]], [[6cs0]], [[6cs1]] – hscvSpi (mutant) – Cryo EM <br />
**[[1wnc]] – hscvSpi fusion core 900-1184<br />
**[[1wnc]] – hscvSpi fusion core 900-1184<br />
Line 25: Line 25:
**[[1wyy]] – hscvSpi 885-1189<br />
**[[1wyy]] – hscvSpi 885-1189<br />
**[[1zv7]], [[1zv8]], [[1zva]], [[1zvb]] – hscvSpi 1150-1193<br />
**[[1zv7]], [[1zv8]], [[1zva]], [[1zvb]] – hscvSpi 1150-1193<br />
-
**[[2ajf]] – hscvSpi RBD + ACHE<br />
+
**[[2ajf]] – hscvSpi RBD + ACEH<br />
**[[2ghw]], [[3bgf]], [[2dd8]] – hscvSpi RBD + antibody<br />
**[[2ghw]], [[3bgf]], [[2dd8]] – hscvSpi RBD + antibody<br />
 +
**[[6acg]], [[6acj]], [[6ack]], [[6cs2]] – hscvSpi + ACE2 - Cryo EM<br />
**[[6u7h]] – hcv229Spi – human coronavirus 229E – Cryo EM <br />
**[[6u7h]] – hcv229Spi – human coronavirus 229E – Cryo EM <br />
**[[6atk]] – hcv229Spi RBD + aminopeptidase <br />
**[[6atk]] – hcv229Spi RBD + aminopeptidase <br />
**[[5x58]], [[5x5b]] – Spi – human SARS coronavirus BJ01 – Cryo EM <br />
**[[5x58]], [[5x5b]] – Spi – human SARS coronavirus BJ01 – Cryo EM <br />
 +
**[[6lxt]] – CV19Spi HR1+HR2 domains 910-988, 1162-1206 – CoVid-19 <br />
**[[6vsb]], [[6vxx]], [[6vyb]] – hsc2Spi – human SARS coronavirus 2 – Cryo EM <br />
**[[6vsb]], [[6vxx]], [[6vyb]] – hsc2Spi – human SARS coronavirus 2 – Cryo EM <br />
-
**[[6m0j]] – hsc2Spi RBD + ACE2<br />
+
**[[6m0j]], [[3d0g]], [[3d0h]], [[3d0i]], [[3sci]], [[3scj]], [[3sck]], [[3scl]] – hsc2Spi RBD + ACE2<br />
**[[5szs]] – hcnSpi – human coronavirus NL63 - Cryo EM<br />
**[[5szs]] – hcnSpi – human coronavirus NL63 - Cryo EM<br />
**[[2ieq]] – hcnSpi residues 981-1038, 1242-1283 <br />
**[[2ieq]] – hcnSpi residues 981-1038, 1242-1283 <br />
Line 39: Line 41:
**[[5x4r]], [[5x4s]] – McvSpi N-terminal – Cryo EM <br />
**[[5x4r]], [[5x4s]] – McvSpi N-terminal – Cryo EM <br />
**[[4zpw]], [[4kqz]] – McvSpi RBD<br />
**[[4zpw]], [[4kqz]] – McvSpi RBD<br />
 +
 +
* Human virus spike protein complex
 +
**[[4kr0]] – McvSpi RBD + CD26<br />
**[[4kr0]] – McvSpi RBD + CD26<br />
**[[6pz8]] – McvSpi + antibody – Cryo EM <br />
**[[6pz8]] – McvSpi + antibody – Cryo EM <br />
**[[6j11]] – McvSpi N-terminal + antibody<br />
**[[6j11]] – McvSpi N-terminal + antibody<br />
 +
**[[5yy5]] – McvSpi RBD + antibody<br />
 +
 +
*Non-human virus spike protein
*Non-human virus spike protein
**[[4h14]] – Spi lectin domain 7-290 - bovine coronavirus<br />
**[[4h14]] – Spi lectin domain 7-290 - bovine coronavirus<br />
-
**[[6b7n]] – Spi – porcine delta coronavirus – Cryo EM <br />
+
**[[6b7n]], [[6bfu]] – Spi – porcine delta coronavirus – Cryo EM <br />
**[[6u7k]], [[6vv5]] – Spi – porcine epidemic diarrhea virus – Cryo EM <br />
**[[6u7k]], [[6vv5]] – Spi – porcine epidemic diarrhea virus – Cryo EM <br />
**[[6qfy]] – Spi lectin domain 15-300 - porcine hemagglutinating encephalomyelitis virus<br />
**[[6qfy]] – Spi lectin domain 15-300 - porcine hemagglutinating encephalomyelitis virus<br />
 +
**[[4fsc]] – Spi RBD + aminopeptidase – porcine respiratory coronavirus <br />
**[[6jhy]] – Spi N-terminal – camel coronavirus HKU23<br />
**[[6jhy]] – Spi N-terminal – camel coronavirus HKU23<br />
**[[6jx7]] – Spi – feline infectious peritonitis virus – Cryo EM <br />
**[[6jx7]] – Spi – feline infectious peritonitis virus – Cryo EM <br />

Revision as of 14:51, 7 April 2020

Human SARS coronavirus trimer (PDB code 5xlr)

Drag the structure with the mouse to rotate

3D Structures of spike protein

Updated on 07-April-2020


References

  1. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Eric Martz, Joel L. Sussman

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