6y6k

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m (Protected "6y6k" [edit=sysop:move=sysop])
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'''Unreleased structure'''
 
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The entry 6y6k is ON HOLD
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==Cryo-EM structure of a Phenuiviridae L protein==
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<StructureSection load='6y6k' size='340' side='right'caption='[[6y6k]], [[Resolution|resolution]] 3.78&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6y6k]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y6K OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Y6K FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6xya|6xya]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6y6k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y6k OCA], [http://pdbe.org/6y6k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6y6k RCSB], [http://www.ebi.ac.uk/pdbsum/6y6k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6y6k ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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This article describes the implementation of real-space refinement in the phenix.real_space_refine program from the PHENIX suite. The use of a simplified refinement target function enables very fast calculation, which in turn makes it possible to identify optimal data-restraint weights as part of routine refinements with little runtime cost. Refinement of atomic models against low-resolution data benefits from the inclusion of as much additional information as is available. In addition to standard restraints on covalent geometry, phenix.real_space_refine makes use of extra information such as secondary-structure and rotamer-specific restraints, as well as restraints or constraints on internal molecular symmetry. The re-refinement of 385 cryo-EM-derived models available in the Protein Data Bank at resolutions of 6 A or better shows significant improvement of the models and of the fit of these models to the target maps.
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Authors:
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Real-space refinement in PHENIX for cryo-EM and crystallography.,Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD Acta Crystallogr D Struct Biol. 2018 Jun 1;74(Pt 6):531-544. doi:, 10.1107/S2059798318006551. Epub 2018 May 30. PMID:29872004<ref>PMID:29872004</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 6y6k" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Busch, C]]
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[[Category: Cusack, S]]
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[[Category: Gogrefe, N]]
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[[Category: Gruenewald, K]]
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[[Category: Guenther, S]]
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[[Category: Kouba, T]]
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[[Category: Meier, K]]
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[[Category: Quemin, E]]
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[[Category: Reindl, S]]
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[[Category: Rosenthal, M]]
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[[Category: Thorkelsson, S R]]
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[[Category: Vogel, D]]
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[[Category: Bunyavirus]]
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[[Category: Cap-snatching]]
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[[Category: L protein]]
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[[Category: Phenuiviridae]]
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[[Category: Viral polymerase]]
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[[Category: Viral protein]]

Revision as of 07:03, 8 April 2020

Cryo-EM structure of a Phenuiviridae L protein

PDB ID 6y6k

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