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5oql

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Revision as of 21:30, 10 April 2020

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

5oql, resolution 3.20Å

Structural highlights

5oql is a 54 chain structure with sequence from Chatd and Chaetomium thermophilum (strain dsm 1495 / cbs 144.50 / imi 039719). Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Experimental data:	Check to display Experimental Data
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[G0S3V7_CHATD] Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.[PIRNR:PIRNR006515] [PNO1_CHATD] Required for small ribosomal subunit (SSU) synthesis. Has a role in the processing of early nucleolar and late cytoplasmic pre-RNA species.[UniProtKB:Q99216] [UTP11_CHATD] Involved in nucleolar processing of pre-18S ribosomal RNA.[UniProtKB:P34247]

Publication Abstract from PubMed

The 40S small ribosomal subunit is cotranscriptionally assembled in the nucleolus as part of a large chaperone complex called the 90S preribosome or small-subunit processome. Here, we present the 3.2-A-resolution structure of the Chaetomium thermophilum 90S preribosome, which allowed us to build atomic structures for 34 assembly factors, including the Mpp10 complex, Bms1, Utp14 and Utp18, and the complete U3 small nucleolar ribonucleoprotein. Moreover, we visualized the U3 RNA heteroduplexes with a 5' external transcribed spacer (5' ETS) and pre-18S RNA, and their stabilization by 90S factors. Overall, the structure explains how a highly intertwined network of assembly factors and pre-rRNA guide the sequential, independent folding of the individual pre-40S domains while the RNA regions forming the 40S active sites are kept immature. Finally, by identifying the unprocessed A1 cleavage site and the nearby Utp24 endonuclease, we suggest a proofreading model for regulated 5'-ETS separation and 90S-pre-40S transition.

3.2-A-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage.,Cheng J, Kellner N, Berninghausen O, Hurt E, Beckmann R Nat Struct Mol Biol. 2017 Oct 2. doi: 10.1038/nsmb.3476. PMID:28967883^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Cheng J, Kellner N, Berninghausen O, Hurt E, Beckmann R. 3.2-A-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage. Nat Struct Mol Biol. 2017 Oct 2. doi: 10.1038/nsmb.3476. PMID:28967883 doi:http://dx.doi.org/10.1038/nsmb.3476

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5oql"

@@ Line 3: / Line 3: @@
 <SX load='5oql' size='340' side='right' viewer='molstar' caption='[[5oql]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5oql]] is a 54 chain structure with sequence from [http://en.wikipedia.org/wiki/Chatd Chatd] and [http://en.wikipedia.org/wiki/Chaetomium_thermophilum_(strain_dsm_1495_/_cbs_144.50_/_imi_039719) Chaetomium thermophilum (strain dsm 1495 / cbs 144.50 / imi 039719)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OQL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OQL FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5oql]] is a 54 chain structure with sequence from [http://en.wikipedia.org/wiki/Chatd Chatd] and [http://en.wikipedia.org/wiki/Chaetomium_thermophilum_(strain_dsm_1495_/_cbs_144.50_/_imi_039719) Chaetomium thermophilum (strain dsm 1495 / cbs 144.50 / imi 039719)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OQL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5OQL FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5oql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oql OCA], [http://pdbe.org/5oql PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5oql RCSB], [http://www.ebi.ac.uk/pdbsum/5oql PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5oql ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5oql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oql OCA], [http://pdbe.org/5oql PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5oql RCSB], [http://www.ebi.ac.uk/pdbsum/5oql PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5oql ProSAT]</span></td></tr>
 </table>
 == Function ==

5oql

From Proteopedia

Revision as of 21:30, 10 April 2020

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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