User:Samantha Schneider/Sandbox1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 6: Line 6:
== Function ==
== Function ==
-
Factor XIII is a transglutaminase that circulates throughout the blood as a heterotetramer. The B subunits bind to the clot structure. When fibrin is present, thrombin cleaves the R37-G38 peptide bond in the A subunit that reveals it's active enzymatic region at the N-terminus. Calcium ions further activate the A subunits through a change in shape. The calcium ions additionally dissociate the non-covalently bound B subunits. The remaining dimer of two active A subunits, FactorXIIIa, crosslinks fibrin by forming isopeptide bonds between glutamines and lysines within the fibrin. The crosslinks make the clot more durable and more resistant to fibrinolysis due to premature enzymatic degradation. It additionally has been found to play a role in proper wound healing, carrying pregnancy to full term, and in the development of new blood vessels.
+
Factor XIII is a transglutaminase that circulates throughout the blood as a heterotetramer. The B subunits bind to the clot structure. When fibrin is present, thrombin cleaves the <scene name='84/842930/Sessile_bond/1'>bond</scene> between the A and B subunits and the R37-G38 peptide bond in the A subunit that reveals it's active enzymatic region at the N-terminus. Calcium ions further activate the A subunits through a change in shape. The calcium ions additionally dissociate the non-covalently bound B subunits. The remaining dimer of two active A subunits, FactorXIIIa, crosslinks fibrin by forming isopeptide bonds between glutamines and lysines within the fibrin. The crosslinks make the clot more durable and more resistant to fibrinolysis due to premature enzymatic degradation. It additionally has been found to play a role in proper wound healing, carrying pregnancy to full term, and in the development of new blood vessels.
== Structural highlights ==
== Structural highlights ==
Line 12: Line 12:
The fibrin stabilization factor is a heterotetramer that circulates throughout the blood plasma as a 320 kda molecule. It consists of a dimer of A subunits and a dimer of B subunits. The FXIIIA subunit is composed of 4 structural units: Beta sandwich, core, barrel-1, and barrel-2 domains. The A subunit has a 37 amino acid N-terminal activation peptide, this is cleaved by thrombin during FXIII activation to FXIIIa.
The fibrin stabilization factor is a heterotetramer that circulates throughout the blood plasma as a 320 kda molecule. It consists of a dimer of A subunits and a dimer of B subunits. The FXIIIA subunit is composed of 4 structural units: Beta sandwich, core, barrel-1, and barrel-2 domains. The A subunit has a 37 amino acid N-terminal activation peptide, this is cleaved by thrombin during FXIII activation to FXIIIa.
-
FXIIIB subunit is made up of ten <scene name='84/842930/Sushi-1/1'>Sushi</scene> domains which are each composed of approximately 60 amino acids. The B subunit is known to have a protective role, but recent research has suggested that there may be a regulatory role as well.
+
FXIIIB subunit is made up of ten <scene name='84/842930/Sushi-1/1'>Sushi</scene> domains which are each composed of approximately 60 amino acids. The B subunit is known to have a protective role, but recent research has suggested that there may be a regulatory role as well. The Sushi domain's variable length loop region is shown to have a hydrophobic interaction with the N-terminal activation region of the A subunit. The variable length loop region of the sushi-1 domain is electrostatically neutral. The Cab1 site is always exposed and therefore is bound by a calcium ion.
<scene name='84/842930/Hydrophobic_tunnel/1'>Hydrophobic Tunnel</scene> is formed in the A subunit upon activation of molecule by calcium. It is the entry for the Q and K substrate to the binding site. It is formed by planar interactions of the Trp rings. The Cysteine is reactive in the binding pocket.
<scene name='84/842930/Hydrophobic_tunnel/1'>Hydrophobic Tunnel</scene> is formed in the A subunit upon activation of molecule by calcium. It is the entry for the Q and K substrate to the binding site. It is formed by planar interactions of the Trp rings. The Cysteine is reactive in the binding pocket.

Revision as of 16:43, 29 April 2020

Human Coagulation Factor XIII

Caption for this structure

Drag the structure with the mouse to rotate

References

Proteopedia Page Contributors and Editors (what is this?)

Samantha Schneider

Personal tools