6tn6
From Proteopedia
(Difference between revisions)
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==X-ray structure of the endo-beta-1,4-mannanase from Thermotoga petrophila== | ==X-ray structure of the endo-beta-1,4-mannanase from Thermotoga petrophila== | ||
- | <StructureSection load='6tn6' size='340' side='right'caption='[[6tn6]]' scene=''> | + | <StructureSection load='6tn6' size='340' side='right'caption='[[6tn6]], [[Resolution|resolution]] 1.45Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6TN6 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6TN6 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6tn6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thep1 Thep1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6TN6 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6TN6 FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6tn6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6tn6 OCA], [http://pdbe.org/6tn6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6tn6 RCSB], [http://www.ebi.ac.uk/pdbsum/6tn6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6tn6 ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> |
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3pz9|3pz9]]</td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Tpet_1542 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=390874 THEP1])</td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Mannan_endo-1,4-beta-mannosidase Mannan endo-1,4-beta-mannosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.78 3.2.1.78] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6tn6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6tn6 OCA], [http://pdbe.org/6tn6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6tn6 RCSB], [http://www.ebi.ac.uk/pdbsum/6tn6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6tn6 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The endo-beta-1,4-mannanase from the hyperthermostable bacterium Thermotoga petrophila (TpMan) is an enzyme that catalyzes the hydrolysis of mannan and heteromannan polysaccharides. Of the three domains that comprise TpMan, the N-terminal GH5 catalytic domain and the C-terminal carbohydrate-binding domain are connected through a central ancillary domain of unknown structure and function. In this study, we report the partial crystal structure of the TpMan at 1.45 A resolution, so far, the first modular hyperthermostable endo-beta-1,4-mannanase structure determined. The structure exhibits two domains, a (beta/alpha)8-barrel GH5 catalytic domain connected via a linker to the central domain with an immunoglobulin-like beta-sandwich fold formed of seven beta-strands. Functional analysis showed that whereas the immunoglobulin-like domain does not have the carbohydrate-binding function, it stacks on the GH5 catalytic domain acting as a thermostabilizing domain and allowing operation at hyperthermophilic conditions. The carbohydrate-binding domain is absent in the crystal structure most likely due to its high flexibility around the immunoglobulin-like domain which may act also as a pivot. These results represent new structural and functional information useful on biotechnological applications for biofuel and food industries. | ||
+ | |||
+ | High-resolution structure of a modular hyperthermostable endo-beta-1,4-mannanase from Thermotoga petrophila: The ancillary immunoglobulin-like module is a thermostabilizing domain.,da Silva VM, Cabral AD, Speranca MA, Squina FM, Muniz JRC, Martin L, Nicolet Y, Garcia W Biochim Biophys Acta Proteins Proteom. 2020 Apr 21;1868(8):140437. doi:, 10.1016/j.bbapap.2020.140437. PMID:32325255<ref>PMID:32325255</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6tn6" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Garcia W]] | + | [[Category: Mannan endo-1,4-beta-mannosidase]] |
- | [[Category: Martin L]] | + | [[Category: Thep1]] |
- | [[Category: Muniz | + | [[Category: Garcia, W]] |
- | [[Category: Nicolet Y]] | + | [[Category: Martin, L]] |
- | [[Category: Sperenca M]] | + | [[Category: Muniz, J R.C]] |
- | [[Category: Squina | + | [[Category: Nicolet, Y]] |
- | [[Category: | + | [[Category: Silva, V M.da]] |
+ | [[Category: Sperenca, M]] | ||
+ | [[Category: Squina, F M]] | ||
+ | [[Category: Hydrolase]] | ||
+ | [[Category: Hyperthermophile]] | ||
+ | [[Category: Mannanase]] |
Revision as of 06:34, 6 May 2020
X-ray structure of the endo-beta-1,4-mannanase from Thermotoga petrophila
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