6u5b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==CryoEM Structure of Pyocin R2 - precontracted - baseplate==
==CryoEM Structure of Pyocin R2 - precontracted - baseplate==
-
<StructureSection load='6u5b' size='340' side='right'caption='[[6u5b]]' scene=''>
+
<StructureSection load='6u5b' size='340' side='right'caption='[[6u5b]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6U5B OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6U5B FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6u5b]] is a 60 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6U5B OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6U5B FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6u5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6u5b OCA], [http://pdbe.org/6u5b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6u5b RCSB], [http://www.ebi.ac.uk/pdbsum/6u5b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6u5b ProSAT]</span></td></tr>
+
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6pyt|6pyt]]</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6u5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6u5b OCA], [http://pdbe.org/6u5b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6u5b RCSB], [http://www.ebi.ac.uk/pdbsum/6u5b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6u5b ProSAT]</span></td></tr>
</table>
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
R-type bacteriocins are minimal contractile nanomachines that hold promise as precision antibiotics(1-4). Each bactericidal complex uses a collar to bridge a hollow tube with a contractile sheath loaded in a metastable state by a baseplate scaffold(1,2). Fine-tuning of such nucleic acid-free protein machines for precision medicine calls for an atomic description of the entire complex and contraction mechanism, which is not available from baseplate structures of the (DNA-containing) T4 bacteriophage(5). Here we report the atomic model of the complete R2 pyocin in its pre-contraction and post-contraction states, each containing 384 subunits of 11 unique atomic models of 10 gene products. Comparison of these structures suggests the following sequence of events during pyocin contraction: tail fibres trigger lateral dissociation of baseplate triplexes; the dissociation then initiates a cascade of events leading to sheath contraction; and this contraction converts chemical energy into mechanical force to drive the iron-tipped tube across the bacterial cell surface, killing the bacterium.
 +
 +
Action of a minimal contractile bactericidal nanomachine.,Ge P, Scholl D, Prokhorov NS, Avaylon J, Shneider MM, Browning C, Buth SA, Plattner M, Chakraborty U, Ding K, Leiman PG, Miller JF, Zhou ZH Nature. 2020 Apr;580(7805):658-662. doi: 10.1038/s41586-020-2186-z. Epub 2020 Apr, 15. PMID:32350467<ref>PMID:32350467</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6u5b" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Avaylon J]]
+
[[Category: Pseae]]
-
[[Category: Browning C]]
+
[[Category: Avaylon, J]]
-
[[Category: Buth SA]]
+
[[Category: Browning, C]]
-
[[Category: Ding K]]
+
[[Category: Buth, S A]]
-
[[Category: Ge P]]
+
[[Category: Ding, K]]
-
[[Category: Leiman PG]]
+
[[Category: Ge, P]]
-
[[Category: Miller JF]]
+
[[Category: Leiman, P G]]
-
[[Category: Plattner M]]
+
[[Category: Miller, J F]]
-
[[Category: Scholl D]]
+
[[Category: Plattner, M]]
-
[[Category: Shneider MM]]
+
[[Category: Scholl, D]]
-
[[Category: Zhou ZH]]
+
[[Category: Shneider, M M]]
 +
[[Category: Zhou, Z H]]
 +
[[Category: Antimicrobial protein]]
 +
[[Category: Bacteriocin]]
 +
[[Category: Pyocin]]
 +
[[Category: Viral protein]]

Revision as of 05:58, 13 May 2020

CryoEM Structure of Pyocin R2 - precontracted - baseplate

PDB ID 6u5b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools