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2mi7

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Revision as of 06:24, 13 May 2020

Solution NMR structure of alpha3Y

Structural highlights

2mi7 is a 1 chain structure with sequence from Synthetic construct sequences. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Related:	1lq7, 2lxy
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Tyrosine oxidation-reduction involves proton-coupled electron transfer (PCET) and a reactive radical state. These properties are effectively controlled in enzymes that use tyrosine as a high-potential, one-electron redox cofactor. The alpha3Y model protein contains Y32, which can be reversibly oxidized and reduced in voltammetry measurements. Structural and kinetic properties of alpha3Y are presented. A solution NMR structural analysis reveals that Y32 is the most deeply buried residue in alpha3Y. Time-resolved spectroscopy using a soluble flash-quench generated [Ru(2,2'-bipyridine)3]3+ oxidant provides high-quality Y32-O* absorption spectra. The rate constant of Y32 oxidation (kPCET) is pH dependent: 1.4 x 104 M-1 s-1 (pH 5.5), 1.8 x 105 M-1 s-1 (pH 8.5), 5.4 x 103 M-1 s-1 (pD 5.5), and 4.0 x 104 M-1 s-1 (pD 8.5). kH/kD of Y32 oxidation is 2.5 +/- 0.5 and 4.5 +/- 0.9 at pH(D) 5.5 and 8.5, respectively. These pH and isotope characteristics suggest a concerted or stepwise, proton-first Y32 oxidation mechanism. The photochemical yield of Y32-O* is 28-58% versus the concentration of [Ru(2,2'-bipyridine)3]3+. Y32-O* decays slowly, t1/2 in the range of 2-10 s, at both pH 5.5 and 8.5, via radical-radical dimerization as shown by second-order kinetics and fluorescence data. The high stability of Y32-O* is discussed relative to the structural properties of the Y32 site. Finally, the static alpha3Y NMR structure cannot explain (i) how the phenolic proton released upon oxidation is removed or (ii) how two Y32-O* come together to form dityrosine. These observations suggest that the dynamic properties of the protein ensemble may play an essential role in controlling the PCET and radical decay characteristics of alpha3Y.

Photochemical Tyrosine Oxidation in the Structurally Well-Defined alphaY Protein: Proton-Coupled Electron Transfer and a Long-Lived Tyrosine Radical.,Glover SD, Jorge C, Liang L, Valentine KG, Hammarstrom L, Tommos C J Am Chem Soc. 2014 Aug 14. PMID:25121576^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Glover SD, Jorge C, Liang L, Valentine KG, Hammarstrom L, Tommos C. Photochemical Tyrosine Oxidation in the Structurally Well-Defined alphaY Protein: Proton-Coupled Electron Transfer and a Long-Lived Tyrosine Radical. J Am Chem Soc. 2014 Aug 14. PMID:25121576 doi:http://dx.doi.org/10.1021/ja503348d

1 Structural highlights
2 Publication Abstract from PubMed
3 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2mi7"

@@ Line 1: / Line 1: @@
 ==Solution NMR structure of alpha3Y==
-<StructureSection load='2mi7' size='340' side='right' caption='[[2mi7]], [[NMR_Ensembles_of_Models | 32 NMR models]]' scene=''>
+<StructureSection load='2mi7' size='340' side='right'caption='[[2mi7]], [[NMR_Ensembles_of_Models | 32 NMR models]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2mi7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synthetic_construct_sequences Synthetic construct sequences]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MI7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MI7 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2mi7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synthetic_construct_sequences Synthetic construct sequences]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MI7 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2MI7 FirstGlance]. <br>
 </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1lq7|1lq7]], [[2lxy|2lxy]]</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mi7 OCA], [http://pdbe.org/2mi7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mi7 RCSB], [http://www.ebi.ac.uk/pdbsum/2mi7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2mi7 ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2mi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mi7 OCA], [http://pdbe.org/2mi7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mi7 RCSB], [http://www.ebi.ac.uk/pdbsum/2mi7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2mi7 ProSAT]</span></td></tr>
 </table>
 <div style="background-color:#fffaf0;">
@@ Line 20: / Line 20: @@
 __TOC__
 </StructureSection>
+[[Category: Large Structures]]
 [[Category: Synthetic construct sequences]]
 [[Category: Glover, S D]]

2mi7

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Revision as of 06:24, 13 May 2020

Solution NMR structure of alpha3Y

Structural highlights

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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