6n2w

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==The structure of Stable-5-Lipoxygenase bound to NDGA==
==The structure of Stable-5-Lipoxygenase bound to NDGA==
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<StructureSection load='6n2w' size='340' side='right'caption='[[6n2w]]' scene=''>
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<StructureSection load='6n2w' size='340' side='right'caption='[[6n2w]], [[Resolution|resolution]] 2.71&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N2W OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6N2W FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6n2w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N2W OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6N2W FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6n2w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n2w OCA], [http://pdbe.org/6n2w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6n2w RCSB], [http://www.ebi.ac.uk/pdbsum/6n2w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6n2w ProSAT]</span></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=30Z:4-[(2R,3S)-3-[(3,4-DIHYDROXYPHENYL)METHYL]-2-METHYLBUTYL]BENZENE-1,2-DIOL'>30Z</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ALOX5, LOG5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arachidonate_5-lipoxygenase Arachidonate 5-lipoxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.34 1.13.11.34] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6n2w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n2w OCA], [http://pdbe.org/6n2w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6n2w RCSB], [http://www.ebi.ac.uk/pdbsum/6n2w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6n2w ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/LOX5_HUMAN LOX5_HUMAN]] Catalyzes the first step in leukotriene biosynthesis, and thereby plays a role in inflammatory processes.<ref>PMID:21233389</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Leukotrienes (LT) are lipid mediators of the inflammatory response that are linked to asthma and atherosclerosis. LT biosynthesis is initiated by 5-lipoxygenase (5-LOX) with the assistance of the substrate-binding 5-LOX-activating protein at the nuclear membrane. Here, we contrast the structural and functional consequences of the binding of two natural product inhibitors of 5-LOX. The redox-type inhibitor nordihydroguaiaretic acid (NDGA) is lodged in the 5-LOX active site, now fully exposed by disordering of the helix that caps it in the apo-enzyme. In contrast, the allosteric inhibitor 3-acetyl-11-keto-beta-boswellic acid (AKBA) from frankincense wedges between the membrane-binding and catalytic domains of 5-LOX, some 30 A from the catalytic iron. While enzyme inhibition by NDGA is robust, AKBA promotes a shift in the regiospecificity, evident in human embryonic kidney 293 cells and in primary immune cells expressing 5-LOX. Our results suggest a new approach to isoform-specific 5-LOX inhibitor development through exploitation of an allosteric site in 5-LOX.
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Structural and mechanistic insights into 5-lipoxygenase inhibition by natural products.,Gilbert NC, Gerstmeier J, Schexnaydre EE, Borner F, Garscha U, Neau DB, Werz O, Newcomer ME Nat Chem Biol. 2020 May 11. pii: 10.1038/s41589-020-0544-7. doi:, 10.1038/s41589-020-0544-7. PMID:32393899<ref>PMID:32393899</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6n2w" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Arachidonate 5-lipoxygenase]]
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[[Category: Human]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Gilbert NC]]
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[[Category: Gilbert, N C]]
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[[Category: Neau DB]]
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[[Category: Neau, D B]]
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[[Category: Newcomer ME]]
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[[Category: Newcomer, M E]]
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[[Category: Allostery]]
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[[Category: Complex]]
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[[Category: Inhibitor]]
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[[Category: Lipoxygenase]]
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[[Category: Oxidoreductase]]
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[[Category: Oxidoreductase-oxidoreductase inhibitor complex]]

Revision as of 07:18, 27 May 2020

The structure of Stable-5-Lipoxygenase bound to NDGA

PDB ID 6n2w

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