6w3v
From Proteopedia
(Difference between revisions)
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==Crystal structure of ligand-binding domain of Campylobacter jejuni chemoreceptor Tlp3 in complex with L-phenylalanine== | ==Crystal structure of ligand-binding domain of Campylobacter jejuni chemoreceptor Tlp3 in complex with L-phenylalanine== | ||
| - | <StructureSection load='6w3v' size='340' side='right'caption='[[6w3v]]' scene=''> | + | <StructureSection load='6w3v' size='340' side='right'caption='[[6w3v]], [[Resolution|resolution]] 1.47Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6W3V OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6W3V FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6w3v]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"campylobacter_fetus_subsp._jejuni"_smibert_1974 "campylobacter fetus subsp. jejuni" smibert 1974]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6W3V OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6W3V FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6w3v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6w3v OCA], [http://pdbe.org/6w3v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6w3v RCSB], [http://www.ebi.ac.uk/pdbsum/6w3v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6w3v ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PHE:PHENYLALANINE'>PHE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">D8X59_02240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197 "Campylobacter fetus subsp. jejuni" Smibert 1974])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6w3v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6w3v OCA], [http://pdbe.org/6w3v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6w3v RCSB], [http://www.ebi.ac.uk/pdbsum/6w3v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6w3v ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Chemotaxis is an important virulence factor of the foodborne pathogen Campylobacter jejuni. Inactivation of chemoreceptor Tlp3 reduces the ability of C. jejuni to invade human and chicken cells and to colonise the jejunal mucosa of mice. Knowledge of the structure of the ligand-binding domain (LBD) of Tlp3 in complex with its ligands is essential for a full understanding of the molecular recognition underpinning chemotaxis. To date, the only structure in complex with a signal molecule is Tlp3 LBD bound to isoleucine. Here, we used in vitro and in silico screening to identify eight additional small molecules that signal through Tlp3 as attractants by directly binding to its LBD, and determined the crystal structures of their complexes. All new ligands (leucine, valine, alpha-amino-N-valeric acid, 4-methylisoleucine, beta-methylnorleucine, 3-methylisoleucine, alanine, and phenylalanine) are nonpolar amino acids chemically and structurally similar to isoleucine. X-ray crystallographic analysis revealed the hydrophobic side-chain binding pocket and conserved protein residues that interact with the ammonium and carboxylate groups of the ligands determine the specificity of this chemoreceptor. The uptake of hydrophobic amino acids plays an important role in intestinal colonisation by C. jejuni, and our study suggests that C. jejuni seeks out hydrophobic amino acids using chemotaxis. | ||
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| + | Structure-Activity Relationship Study Reveals the Molecular Basis for Specific Sensing of Hydrophobic Amino Acids by the Campylobacter jejuni Chemoreceptor Tlp3.,Khan MF, Machuca MA, Rahman MM, Koc C, Norton RS, Smith BJ, Roujeinikova A Biomolecules. 2020 May 11;10(5). pii: biom10050744. doi: 10.3390/biom10050744. PMID:32403336<ref>PMID:32403336</ref> | ||
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| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6w3v" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Campylobacter fetus subsp. jejuni smibert 1974]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Khan | + | [[Category: Khan, M F]] |
| - | [[Category: Machuca | + | [[Category: Machuca, M A]] |
| - | [[Category: Rahman | + | [[Category: Rahman, M M]] |
| - | [[Category: Roujeinikova A]] | + | [[Category: Roujeinikova, A]] |
| + | [[Category: Bacterial chemotaxis]] | ||
| + | [[Category: Chemoreceptor]] | ||
| + | [[Category: Double cache]] | ||
| + | [[Category: Ligand binding domain]] | ||
| + | [[Category: Signaling protein]] | ||
Revision as of 07:40, 27 May 2020
Crystal structure of ligand-binding domain of Campylobacter jejuni chemoreceptor Tlp3 in complex with L-phenylalanine
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