6m40

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<StructureSection load='6m40' size='340' side='right'caption='[[6m40]], [[Resolution|resolution]] 2.89&Aring;' scene=''>
<StructureSection load='6m40' size='340' side='right'caption='[[6m40]], [[Resolution|resolution]] 2.89&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6m40]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M40 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6M40 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6m40]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Alongshan_virus Alongshan virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M40 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6M40 FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5jmt|5jmt]]</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5jmt|5jmt]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6m40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m40 OCA], [http://pdbe.org/6m40 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m40 RCSB], [http://www.ebi.ac.uk/pdbsum/6m40 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m40 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6m40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m40 OCA], [http://pdbe.org/6m40 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m40 RCSB], [http://www.ebi.ac.uk/pdbsum/6m40 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m40 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Alongshan virus (ALSV) is an emerging human pathogen that was identified in China and rapidly spread to the European continent in 2019, raising concerns about public health. ALSV belongs to the distinct Jingmenvirus group within the Flaviviridae family with segmented RNA genomes. While segments 2 and 4 of the ALSV genome encode the VP1-VP3 proteins of unknown origin, segments 1 and 3 encode the NS2b-NS3 and NS5 proteins, which are related to Flavivirus nonstructural proteins, suggesting an evolutionary link between segmented and unsegmented viruses within the Flaviviridae family. Here, the enzymatic activity of the ALSV NS3-like helicase (NS3-Hel) was characterized and its crystal structure was determined to 2.9 A resolution. ALSV NS3-Hel exhibits an ATPase activity that is comparable to those measured for Flavivirus NS3 helicases. The structure of ALSV NS3-Hel exhibits an overall fold similar to those of Flavivirus NS3 helicases. Despite the limited amino-acid sequence identity between ALSV NS3-Hel and Flavivirus NS3 helicases, structural features at the ATPase active site and the RNA-binding groove remain conserved in ALSV NS3-Hel. These findings provide a structural framework for drug design and suggest the possibility of developing a broad-spectrum antiviral drug against both Flavivirus and Jingmenvirus.
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Crystal structure of the NS3-like helicase from Alongshan virus.,Gao X, Zhu K, Wojdyla JA, Chen P, Qin B, Li Z, Wang M, Cui S IUCrJ. 2020 Apr 10;7(Pt 3):375-382. doi: 10.1107/S2052252520003632. eCollection, 2020 May 1. PMID:32431821<ref>PMID:32431821</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6m40" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Alongshan virus]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Chen, P]]
[[Category: Chen, P]]

Revision as of 06:34, 3 June 2020

Crystal structure of the NS3-like helicase from Alongshan virus

PDB ID 6m40

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