6txg
From Proteopedia
(Difference between revisions)
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==Proteinase K in complex with a "half sandwich"-type Ru(II) coordination compound== | ==Proteinase K in complex with a "half sandwich"-type Ru(II) coordination compound== | ||
- | <StructureSection load='6txg' size='340' side='right'caption='[[6txg]]' scene=''> | + | <StructureSection load='6txg' size='340' side='right'caption='[[6txg]], [[Resolution|resolution]] 1.37Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6TXG OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6TXG FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6txg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Parengyodontium_album Parengyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6TXG OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6TXG FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6txg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6txg OCA], [http://pdbe.org/6txg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6txg RCSB], [http://www.ebi.ac.uk/pdbsum/6txg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6txg ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=NYN:chlorido(1,2-diaminoethane-k2N,N)(1,4,7-trithiacyclononane-k3S,S,S)ruthenium(II)+trifluoromethanesulfonate'>NYN</scene>, <scene name='pdbligand=TFS:TRIFLUOROMETHANESULFONIC+ACID'>TFS</scene></td></tr> |
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6txg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6txg OCA], [http://pdbe.org/6txg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6txg RCSB], [http://www.ebi.ac.uk/pdbsum/6txg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6txg ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/PRTK_PARAQ PRTK_PARAQ]] Hydrolyzes keratin at aromatic and hydrophobic residues. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The high-resolution X-ray crystal structures of the adducts formed between the "half sandwich"-type Ru(II) coordination compound [Ru(II)(1,4,7-trithiacyclononane)(ethane-1,2-diamine)Cl](+) and two proteins, namely hen egg-white lysozyme and proteinase K, are presented. The structures unveil that upon reaction with both enzymes the Ru(II) compound is coordinated by solvent-exposed aspartate residues after releasing the chloride ligand (Asp101 in lysozyme, Asp200 and Asp260 in proteinase K), while retaining the two chelating ligands. The adduct with Asp101 residue at the catalytic cleft of lysozyme is accompanied by residue-specific conformational changes to accommodate the Ru(II) fragment, whereas the complexes bound at the two calcium-binding sites of proteinase K revealed minimal structural perturbation of the enzyme. To the best of our knowledge, proteinase K is used here for the first time as a model system of protein metalation and these are the first X-ray crystal structures of protein adducts of a Ru(II) coordination compound that maintains its coordination sphere almost intact upon binding. Our data demonstrate the role of ligands in stabilizing the protein adducts via hydrophobic/aromatic or hydrogen-bonding interactions, as well as their underlying role in the selection of specific sites on the electrostatic potential surface of the enzymes. | ||
+ | |||
+ | High-resolution crystal structures of a "half sandwich"-type Ru(II) coordination compound bound to hen egg-white lysozyme and proteinase K.,Chiniadis L, Bratsos I, Bethanis K, Karpusas M, Giastas P, Papakyriakou A J Biol Inorg Chem. 2020 Apr 8. pii: 10.1007/s00775-020-01786-z. doi:, 10.1007/s00775-020-01786-z. PMID:32266561<ref>PMID:32266561</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6txg" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Bratsos I]] | + | [[Category: Parengyodontium album]] |
- | [[Category: Chiniadis L]] | + | [[Category: Peptidase K]] |
- | [[Category: Giastas P]] | + | [[Category: Bratsos, I]] |
- | [[Category: Papakyriakou A]] | + | [[Category: Chiniadis, L]] |
+ | [[Category: Giastas, P]] | ||
+ | [[Category: Papakyriakou, A]] | ||
+ | [[Category: Anticancer]] | ||
+ | [[Category: Complex]] | ||
+ | [[Category: Enzyme]] | ||
+ | [[Category: Hydrolase]] |
Revision as of 06:38, 3 June 2020
Proteinase K in complex with a "half sandwich"-type Ru(II) coordination compound
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