This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Amylase 3D structures

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 4: Line 4:
* α-amylase
* α-amylase
-
** [[3n8t]] – TkAAM – ''Thermococcus kodakarensis''
+
** [[1pif]] – pAAM – pig<br />
-
** [[3k8k]] – BtAAM – ''Bacterioides thetaiotaomicron''
+
** [[1ht6]], [[1amy]] - bAAM – barley<br />
-
** [[3kwx]], [[2guy]] – AoAAM – ''Aspergilluys oryzae''
+
** [[3bsg]] – bAAM (mutant) <br />
-
** [[2wpg]] – AAM – ''Xanthomonas campestris''
+
** [[3wn6]] – AAM (mutant) – Japonica rice<br />
-
** [[2wc7]], [[2wcs]], [[2wkg]] – AAM catalytic region – ''Cyanobacterium''
+
** [[3n8t]] – TkAAM – ''Thermococcus kodakarensis''<br />
-
** [[3bh4]] – BaAAM – ''Bacillus amyloliquefaciens''
+
** [[3k8k]] – BtAAM – ''Bacterioides thetaiotaomicron''<br />
-
** [[1e3x]], [[1e43]] – BaAAM chimera
+
** [[3kwx]], [[2guy]] – AoAAM – ''Aspergilluys oryzae''<br />
-
** [[1ht6]], [[1amy]] - bAAM – barley
+
** [[2wpg]] – AAM – ''Xanthomonas campestris''<br />
-
** [[3bsg]] – bAAM (mutant)
+
** [[2wc7]], [[2wcs]], [[2wkg]] – AAM catalytic region – ''Cyanobacterium''<br />
-
** [[3dhu]] – AAM – ''Lactobacillus plantarum''
+
** [[3bh4]] – BaAAM – ''Bacillus amyloliquefaciens''<br />
-
** [[3dc0]], [[1ud2]], [[1ud4]], [[1ud5]], [[1ud6]], [[1ud8]], [[1ud3]] – BacAAM – ''Bacillus KR8104''
+
** [[1e3x]], [[1e43]] – BaAAM chimera<br />
-
** [[3bcf]], [[1wza]] – HoAAM – ''Halothermothrix orenii''
+
** [[3dhu]] – AAM – ''Lactobacillus plantarum''<br />
-
** [[2die]], [[1wp6]] – AAM alkaline – ''Bacillus sp.''
+
** [[3dc0]], [[1ud2]], [[1ud4]], [[1ud5]], [[1ud6]], [[1ud8]], [[1ud3]] – BacAAM – ''Bacillus KR8104''<br />
-
** [[2gjr]] – BhAAM – ''Bacillus halmapalus''
+
** [[3bcf]], [[1wza]] – HoAAM – ''Halothermothrix orenii''<br />
-
** [[2b5d]] – AAM – ''Thermotoga maritima''
+
** [[2die]], [[1wp6]] – AAM alkaline – ''Bacillus sp.''<br />
-
** [[2c3g]], [[2c3v]] – BhaloAAM – ''Bacillus halodurans''
+
** [[2gjr]] – BhAAM – ''Bacillus halmapalus''<br />
-
** [[1ji1]], [[1ji2]], [[1bvz]] - TvAAM – ''Thermoactinomyces vulgaris''
+
** [[2b5d]] – AAM – ''Thermotoga maritima''<br />
 +
** [[2c3g]], [[2c3v]] – BhaloAAM – ''Bacillus halodurans''<br />
 +
** [[1ji1]], [[1ji2]], [[1bvz]] - TvAAM – ''Thermoactinomyces vulgaris''<br />
** [[1wzk]], [[1wzl]], [[1wzm]], [[1izj]], [[1izk]], [[1jf5]], [[1jf6]] – TvAAM (mutant)
** [[1wzk]], [[1wzl]], [[1wzm]], [[1izj]], [[1izk]], [[1jf5]], [[1jf6]] – TvAAM (mutant)
-
** [[1mwo]], [[1mxd]] – PwAAM – ''Pyrococcus woesei''
+
** [[1mwo]], [[1mxd]] – PwAAM – ''Pyrococcus woesei''<br />
** [[1ob0]], [[1bli]] - BlAAM (mutant) – ''Bacillus licheniformis''<br />
** [[1ob0]], [[1bli]] - BlAAM (mutant) – ''Bacillus licheniformis''<br />
** [[1vjs]] – BlAAM precursor<br />
** [[1vjs]] – BlAAM precursor<br />
** [[1bpl]] – BlAAM<br />
** [[1bpl]] – BlAAM<br />
-
** [[1b0i]], [[1aqm]], [[1aqh]] – PhAAM - ''Pseudoalteromonas haloplanktis''
+
** [[1b0i]], [[1aqm]], [[1aqh]] – PhAAM - ''Pseudoalteromonas haloplanktis''<br />
-
** [[1jd7]], [[1jd9]] - PhAAM (mutant)
+
** [[1jd7]], [[1jd9]] - PhAAM (mutant)<br />
-
** [[1g5a]] – NpAAM – ''Neisseria polysaccharea''
+
** [[1g5a]] – NpAAM – ''Neisseria polysaccharea''<br />
-
** [[1hvx]] - BaAAM – ''Bacillus stearothermophilus''
+
** [[1hvx]] - BaAAM – ''Bacillus stearothermophilus''<br />
**[[4uzu]] – BaAAM (mutant) <br />
**[[4uzu]] – BaAAM (mutant) <br />
-
** [[1qho]] – GsAAM – ''Geobacillus stearothermophilus''
+
** [[1qho]] – GsAAM – ''Geobacillus stearothermophilus''<br />
-
** [[1jae]] – TmAAM – ''Tenebrio molitor''
+
** [[1jae]] – TmAAM – ''Tenebrio molitor''<br />
-
** [[1pif]] – pAAM – pig
+
** [[6taa]], [[2aaa]] - AoAAM<br />
** [[6taa]], [[2aaa]] - AoAAM<br />
** [[4aee]] – AAM catalytic domain – ''Staphylothermus marinus''<br />
** [[4aee]] – AAM catalytic domain – ''Staphylothermus marinus''<br />
Line 42: Line 43:
**[[5m99]] – AAM – ''Thermotoga petrophila''<br />
**[[5m99]] – AAM – ''Thermotoga petrophila''<br />
** [[4ays]] – AAM – ''Deinococcus radiodurans''<br />
** [[4ays]] – AAM – ''Deinococcus radiodurans''<br />
-
** [[3wn6]] – AAM (mutant) – Japonica rice<br />
 
**[[5a2a]] - AnAAM - ''Anoxybacillus''<br />
**[[5a2a]] - AnAAM - ''Anoxybacillus''<br />
**[[6az5]] – AAM – ''Eubacterium rectale''<br />
**[[6az5]] – AAM – ''Eubacterium rectale''<br />
 +
**[[6sao]] – AAM – ''Thamnidium elegans''<br />
 +
**[[6sau]] – AAM – ''Cordyceps farinosa''<br />
 +
**[[6sav]] – AAM – ''Rhizomucor pusillus''<br />
** ''AAM saccharide complexes''
** ''AAM saccharide complexes''
-
*** [[3n92]], [[3n98]] – TkAAM + saccharide<br />
 
*** [[3l2l]], [[3l2m]], [[1vah]], [[1wo2]], [[1ua3]], [[1pig]], [[1ppi]] - pAAM + saccharide<br />
*** [[3l2l]], [[3l2m]], [[1vah]], [[1wo2]], [[1ua3]], [[1pig]], [[1ppi]] - pAAM + saccharide<br />
*** [[1hx0]] – pAAM + acarbose<br />
*** [[1hx0]] – pAAM + acarbose<br />
*** [[1ose]] – pAAM + acarbose<br />
*** [[1ose]] – pAAM + acarbose<br />
-
*** [[3k8l]] - BtAAM (mutant) + saccharide<br />
 
-
*** [[3k8m]] - BtAAM + acarbose<br />
 
-
***[[6bs6]] – BtAAM (mutant) + glucose<br />
 
-
*** [[2d2o]], [[1jl8]], [[1jib]] - TvAAM + saccharide<br />
 
-
*** [[3a6o]] – TvAAM + acarbose<br />
 
-
*** [[2d0f]], [[2d0g]], [[2d0h]], [[1vb9]], [[1vfm]], [[1vfo]], [[1vfu]], [[1uh2]], [[1uh4]] - TvAAM (mutant) + saccharide<br />
 
-
*** [[1uh3]] - TvAAM (mutant) + acarbose<br />
 
*** [[1bg9]], [[1rpk]] - bAAM + acarbose<br />
*** [[1bg9]], [[1rpk]] - bAAM + acarbose<br />
*** [[1p6w]] – bAAM + substrate analog
*** [[1p6w]] – bAAM + substrate analog
Line 65: Line 60:
**[[6f9h]], [[6f9j]] - bAAM (mutant) + prodrug<br />
**[[6f9h]], [[6f9j]] - bAAM (mutant) + prodrug<br />
**[[6f9l]] - bAAM (mutant) + maltose derivative<br />
**[[6f9l]] - bAAM (mutant) + maltose derivative<br />
 +
*** [[3k8l]] - BtAAM (mutant) + saccharide<br />
 +
*** [[3k8m]] - BtAAM + acarbose<br />
 +
***[[6bs6]] – BtAAM (mutant) + glucose<br />
 +
*** [[2d2o]], [[1jl8]], [[1jib]] - TvAAM + saccharide<br />
 +
*** [[3a6o]] – TvAAM + acarbose<br />
 +
*** [[2d0f]], [[2d0g]], [[2d0h]], [[1vb9]], [[1vfm]], [[1vfo]], [[1vfu]], [[1uh2]], [[1uh4]] - TvAAM (mutant) + saccharide<br />
*** [[3bcd]] - HoAAM + saccharide<br />
*** [[3bcd]] - HoAAM + saccharide<br />
*** [[3bc9]] - HoAAM + acarbose<br />
*** [[3bc9]] - HoAAM + acarbose<br />
Line 87: Line 88:
*** [[5a2c]], [[5a2b]] - AnAAM + maltose <br />
*** [[5a2c]], [[5a2b]] - AnAAM + maltose <br />
**[[6gya]] - AAM + a-glucose + b-glucose - ''Alicyclosbacillus''<br />
**[[6gya]] - AAM + a-glucose + b-glucose - ''Alicyclosbacillus''<br />
 +
*** [[3n92]], [[3n98]] – TkAAM + saccharide<br />
** ''AAM other complexes''
** ''AAM other complexes''
Line 112: Line 114:
**[[1xh1]] - hAAM (mutant) + Cl<br />
**[[1xh1]] - hAAM (mutant) + Cl<br />
**[[3old]], [[3ole]], [[3olg]], [[3oli]] – hAAM + statin<br />
**[[3old]], [[3ole]], [[3olg]], [[3oli]] – hAAM + statin<br />
-
**[[1u2y]], [[1u30]], [[1u33]], [[5emy]], [[5e0f]], [[4w93]] – hAAM + inhibitor <br />
+
**[[1u2y]], [[1u30]], [[1u33]], [[5emy]], [[5e0f]], [[4w93]], [[6obx]], [[6ocn]] – hAAM + inhibitor <br />
**[[5kez]], [[5va9]] – hAAM + peptide inhibitor <br />
**[[5kez]], [[5va9]] – hAAM + peptide inhibitor <br />
**[[4gqq]] – hAAM + ethyl caffeate<br />
**[[4gqq]] – hAAM + ethyl caffeate<br />
Line 152: Line 154:
** [[1wdp]] – sBAM – soybean
** [[1wdp]] – sBAM – soybean
** [[2dqx]], [[1uko]], [[1ukp]] – sBAM (mutant)
** [[2dqx]], [[1uko]], [[1ukp]] – sBAM (mutant)
-
** [[1vem]], [[5bca]], [[1cqy]], [[1b90]] – BcBAM – ''Bacillus cereus''
 
-
** [[1ven]] - BcBAM (mutant)<br />
 
** [[1fa2]] - BAM + saccharide – Sweet potato<br />
** [[1fa2]] - BAM + saccharide – Sweet potato<br />
**[[6ger]] - BAM – wheat<br />
**[[6ger]] - BAM – wheat<br />
 +
** [[1vem]], [[5bca]], [[1cqy]], [[1b90]] – BcBAM – ''Bacillus cereus''
 +
** [[1ven]] - BcBAM (mutant)<br />
** ''β-amylase binary complexes''
** ''β-amylase binary complexes''

Revision as of 09:27, 4 June 2020

3D structures of Amylase

Updated on 04-June-2020


Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

Retrieved from "http://52.214.119.220/wiki/index.php/Amylase_3D_structures"
Personal tools