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3D structures of non-human antibody
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Michal Harel (Talk | contribs)
(New page: ==3D structures of Antibody== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Fab **3i75, 1nqb, [[1f4...)
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Revision as of 09:52, 9 June 2020
3D structures of Antibody
Updated on 09-June-2020 {{#tree:id=OrganizedByTopic|openlevels=0|
- Fab
- 3i75, 1nqb, 1f4w, 1aif, 1ghf, 2z91, 1ind, 3bkc, 3bkm, 1iy0, 3pp3, 3pp4, 3okm, 6fab, 2hkh, 1ay1, 1nbv, 1qbm, 1bbd, 1dsf, 1gpo, 1mnu, 1igf, 1for, 1k6q, 1bz7, 1dqd, 2ipt, 2iq9, 2iqa, 2w60, 2w9d, 3iu4, 1q9k, 1q9l, 1q9o, 2z4q, 1cl7, 1cr9, 1r24, 1gig, 1uyw, 1cgs, 2cgr, 1q0x, 1ibg, 3eo0, 2op4, 2q76, 2ojz, 2g60, 2dbl, 1dbj, 1dbk, 1dbm, 1dba, 1mrc, 2gcy, 1flr, 1uz6, 1rfd, 1t2q, 1ggb, 1ggc, 1bm3, 2eh7, 2fat, 3cfc, 1fl3, 3cfe, 4j1u, 4gq9, 3qg7, 3rvt, 3s62, 4gay, 5mx3, 5l88, 5i66, 5cma, 5az2, 4z0b, 4qth, 4poz, 5vzr, 5lgh, 5l9d, 5l7x, 5h2b, 4lci, 4k23, 6p79 - mFab – mouse
- 3eot, 2d03, 3esv, 3et9 – mFab (mutant)
- 3iy2, 3iy3, 3iy4, 3iy5, 3iy6, 3iy7 - mFab – Cryo EM
- 1jpt, 3mxv, 2o5x, 1ucb, 1bbj, 1t04, 2fgw, 1fvd, 1fve, 4kuz, 6l8t - hmFab
- 1cqk – mFab MAK33 CH3 domain
- 6a0x - mFab anti-influenza virus
- 6h3h - mFab anti-fullerene
- 6pyc - mFab anti-kappa
- 6pyd - mFab anti-marinobufagenin
- 6idh, 6kdh - mFab anti-photoproduct
- 3mj8, 3r06 – AhFab – Armenian hamster
- 3iy1, 1zan – raFab – rat
- 4k3e, 4k3d – bFab – bovine
- 6e8v – bFab-1
- 6e9g – bFab-2
- 6e9h – bFab-3
- 6e9i – bFab-4
- 6e9k – bFab-5
- 6e9q – bFab-6
- 6e9u – bFab-7
- 4b41, 4m3j – LgFab – Lama glama
- 6df0, 6dez - syFab anti-phosphotyrosine - synthetic
- 3i75, 1nqb, 1f4w, 1aif, 1ghf, 2z91, 1ind, 3bkc, 3bkm, 1iy0, 3pp3, 3pp4, 3okm, 6fab, 2hkh, 1ay1, 1nbv, 1qbm, 1bbd, 1dsf, 1gpo, 1mnu, 1igf, 1for, 1k6q, 1bz7, 1dqd, 2ipt, 2iq9, 2iqa, 2w60, 2w9d, 3iu4, 1q9k, 1q9l, 1q9o, 2z4q, 1cl7, 1cr9, 1r24, 1gig, 1uyw, 1cgs, 2cgr, 1q0x, 1ibg, 3eo0, 2op4, 2q76, 2ojz, 2g60, 2dbl, 1dbj, 1dbk, 1dbm, 1dba, 1mrc, 2gcy, 1flr, 1uz6, 1rfd, 1t2q, 1ggb, 1ggc, 1bm3, 2eh7, 2fat, 3cfc, 1fl3, 3cfe, 4j1u, 4gq9, 3qg7, 3rvt, 3s62, 4gay, 5mx3, 5l88, 5i66, 5cma, 5az2, 4z0b, 4qth, 4poz, 5vzr, 5lgh, 5l9d, 5l7x, 5h2b, 4lci, 4k23, 6p79 - mFab – mouse
- Anti-HIV Fab
- Mouse Fab: small molecule complex
- 3ra7 – mFab + digoxigenin
- 3okd, 3oke, 3okk, 3okl, 3okn, 3oko, 3hzk, 3hzm, 3hzv, 3hzy, 3pho, 3phq, 3hns, 3hnt, 3hnv - mFab + liposaccharide
- 1ine, 1ub5, 1ub6 - mFab + hapten
- 3ls4 – mFab + tetrahydrocannabinol
- 1mfc, 1mfd, 1mfe, 4hgw – mFab + polysaccharide
- 2ntf - mFab RS2-1G9 + lactone analog
- 1riu, 1riv, 1qyg, 1q72 - mFab + cocaine derivative
- 1ynk, 1ynl, 1etz – mFab + sweetener
- 1yef – mFab D2.3 + substrate analog
- 1yeg - mFab D2.3 + product
- 1p7k – mFab + HEPES
- 1q0y – mFab 9B1 + morphine
- 3sy0, 3t65, 3t77, 3t4y, 1q9w, 1f4x, 1f4y, 1mfa, 1mfb - mFab + carbohydrate
- 1mex – mFab 29G12 + benzoic acid derivative
- 1mrd, 1mre, 1mrf – mFab JEL103 + nucleotide
- 1dbb – mFab DB3 + progesterone
- 1igj - mFab 26-10 + digoxin
- 4fab – mFab 4-4-20 + fluorescin
- 1dl7 - mFab MCPC603 + phosphocholine
- 3cfb, 3cfd, 2g2r – mFab + stilbene hapten
- 4kze, 4kzd – mFab + RNA
- 6kdi - mFab anti-photoproduct + DNA
- 2jb5, 2jb6 - hmFab + hapten
- 3eyv - hmFab 13G5 (mutant) + hapten
- 3ra7 – mFab + digoxigenin
- Mouse Fab: peptide complex
- 3e8u - mFab + BNP peptide
- 2a6d, 2a6i, 2a6j, 2a6k - mFab + peptide
- 3hr5 – mFab + M1prime peptide
- 3eys, 3eyu - mFab + amyloid-β-related peptide
- 3ggw – mFab + carbohydrate-mimetic peptide
- 3cxd, 3dsf, 5x5x – mFab + osteopontin peptide
- 2zpk – mFab + proteinase-activated receptor peptide
- 3ifl, 3ifn, 3ifo, 3ifp - mFab + amyloid peptide
- 2eh8 - mFab + PRES1 peptide
- 2brr – mFab + outer membrane protein peptide
- 1xgy – mFab + rhodopsin peptide
- 1pz5 – mFab SYA/J6 + peptide
- 1a3r – mFab + rhinovirus capsid peptide
- 1cu4 - mFab + prion protein peptide
- 1fpt – mFab + poliovirus peptide
- 1jp5 – mFab + HIV-1 protease peptide
- 1mvu – mFab + glycoprotein
- 2ap2 – mFab + glycoprotein peptide + C-myc peptide
- 1frg, 1him, 1hin, 1ifh - mFab + hemagglutinin peptide
- 1tet – mFab + cholera toxin peptide
- 5epm – mFab + therapotoxin peptide
- 5eor, 5eoq – mFab + protein A27 peptide
- 1i8i, 1i8k – mFab + EGFR peptide
- 1i8k – mFab + EGFR peptide
- 1i8i, 1i8k – mFab + EGFR peptide
- 1i8k – mFab + EGFR peptide
- 4gag, 4gaj – mFab + genome polyprotein peptide
- 5nph – mFab + hepatitis virus peptide
- 5mv4, 5mu0 – mFab + collagen peptide
- 3e8u - mFab + BNP peptide
- Other Fab: peptide complex
- Anti-HIV Fab: peptide complex
- Mouse Fab: protein complex
- 1tzh, 1tzi - mFab + VEGF
- 1fsk, 5vfy - mFab + pollen allergen
- 3raj – mFab HB7 + CD38
- 6u9s – mFab 5A6 + CD81
- 3o0r, 5gux – mFab + nitric oxide reductase
- 1ahw - mFab 5G9+ tissue factor
- 2w9e, 1tpx, 1tqb, 1tqc – mFAB + major prion protein
- 2oz4 – mFab + intercellular adhesion molecule
- 3eo1 - mFab GC-1008 + transforming growth factor β-3
- 4zxb – mFab 83 + insulin receptor
- 1egj – mFab + cytokine receptor
- 2bdn – mFab + cytokine A2
- 1jrh – mFab + interferon-γ receptor
- 1ob1 – mFab + major merozoite surface protein
- 1qfw – mFab + gonadotropin
- 4cad – mFab + RCE1
- 4m48, 4xpt, 4xph, 4xpg, 4xpf, 4xpb, 4xpa, 4xp9, 4xp6, 4xp5, 4xp4, 4xp1, 4xnx, 4xnu – mFab + dopamine transporter
- 5i75, 5i74, 5i73, 5i71, 5i6z, 5i6x, 6awq, 6awp, 6awo, 6awn, 6w2b, 6w2c – mFab + serotonin transporter
- 6dzv, 6dzw, 6dzy, 6dzz, 6vrh, 6vrk, 6vrl – mFab + serotonin transporter – Cryo EM
- 1yjd – mFab 5.11A1 + CD28
- 1sy6 – mFab OKT3 + CD3
- 5dfv – mFab + CD81
- 4r0l – mFab + CD28
- 4qex, 4k2u – mFab + erythrocyte binding antigen
- 2r9h, 6ad7, 6ad8, 6ada, 6adb, 6adc – mFab + exchange transporter ClCA
- 1rjl – mFab + outer surface protein
- 1mhh – mFab + protein L (mutant)
- 1pg7 – mFab 6A6 + hmFab D3H44
- 2jel – mFab JEL42 + histidine-containing protein
- 1nsn – mFab N10 + nuclease
- 1nfd – mFab H57 + T-cell receptor
- 1igc – mFab MOPC21 + streptococcal protein G
- 1iai – mFab idiotipic + mFab anti-idiotypic
- 2r8s – mFab + RNA
- 2fr4, 1xf2, 1xf3, 1xf4, 1i8m, 1cbv, 6idg – mFab + DNA
- 1mhp, 3q3g, 3qa3 – mFab + integrin
- 3etb – mFab M18 (mutant) + anthrax-protective antigen
- 3f5w, 3pjs, 3efd, 3eff, 2hjf, 2w0f, 4msw, 4uuj – mFab + KcsA K+ channel
- 3stl, 3stz, 4i9w, 5ec2, 5ec1, 5ebw, 5ebm, 5ebl, 5e1a, 6nfu, 6nfv, 6pa0 - mFab + KcsA K+ channel (mutant)
- 1kb5 – mFab + T-cell receptor
- 4i18 – mFab + pro-lactin receptor
- 1uwx – mFab + protein G prime
- 4ckd – mFab + β-galactosidase
- 5tih – mFab + cysteine-rich protective antigen
- 5t5n, 4rdq – mFab + bestrophin
- 5e94 – mFab + glucagon-like receptor
- 5e8d – mFab + proepiregulin
- 5fb8 - mFab + interleukin
- 5d96, 5d93 - mFab + sulfhydryl oxidase
- 4ybq – mFab + fructose transporter
- 4xzu - mFab + coagulation factor
- 4u6h - mFab + virion membrane protein M25
- 4r9y, 4r97 - mFab + platelet factor 4
- 4qww - mFab + acetylcholinesterase
- 4qti – mFab + urokinase-type plasminogen activator
- 4pp2, 5vco – mFab + peptidase
- 4p3d, 4p3c – mFab + metalloproteinase 14
- 4ong, 4onf - mFab + amyloid-β A4 protein
- 4oii - mFab + NS1
- 5ldn – mFab + hexon C5
- 5ldn – mFab + MIG-C4
- 1tzh, 1tzi - mFab + VEGF
- Mouse Fab: viral protein complex
- 6a0z, 1eo8, 1ken, 4mhh, 4mhj, 6n5b, 6n5d - mFab anti-influenza virus hemagglutinin
- 4qnp, 1nca, 1ncb, 1ncc, 1ncd – mFab + influenza neuraminidase
- 1rvf – mFab 17-IA + intact rhinovirus
- 3j3o, 3j3p- mFab + poliovirus proteins – cryoEM
- 6mui, 6mw9, 6mwc, 6mwv, 6mwx - mFab + equine encephalitis virus proteins – cryoEM
- 6j5g, 6j5f - mFab + tick-borne encephalitis virus protein
- 6j5d - mFab + louping ILL virus protein – cryoEM
- 5kvg, 5kvf, 5kve, 5kvd, 5jhl – mFab + zika envelope DIII
- 3ve0 - mFab + Ebola envelope glycoprotein
- 5y9t, 5y9c, 5y9f – mFab + papilloma virus capsid protein
- 4l5f – mFab + dengue virus envelope protein
- 5zud, 5zuf – mFab + enterovirus caspid proteins – Cryo EM
- 6tys – mFab + nipa virus fusion protein – Cryo EM
- 3fmg – mFab + rotavirus glycoprotein VP7
- 3ixx, 3ixy - mFab E53 + envelope glycoprotein + West Nile virus peptide
- 1afv – mFab anti-HIV + capsid protein C
- 6a0z, 1eo8, 1ken, 4mhh, 4mhj, 6n5b, 6n5d - mFab anti-influenza virus hemagglutinin
Other Fab: protein complex
- 3ld8, 3ldb – AhFab + bifunctional arginine demethylase
- 3mj9 – AhFab HL4E10 + JAML
- 3r08 - AhFab 2C11 + CD3ε
- 1jps - hmFab D3H44 + tissue factor
- 5f3h, 5f3b - hmFab + growth factor 8
- 1pkq – hmFab 8-18C5 + myelin glycoprotein
- 2b2x – rFab AQC2 + integrin
- 4ht1 – rFab + TNF ligand 12
- 6cf2 – rFab + REV
- 6p65 – rFab + HIV protein – Cryo EM
- 6osh, 6osv – rFab + ROR2
- 2r56 – bFab igE + β-lactoglobulin
- 1g6v – bFab + carbonic anhydrase
- 4hgk – Fab + albumin – shark
- 4n9g - rmFab + scaffold
- 6mqc, 6mqe, 6mqm, 6mqr, 6mqs, 6n16 - rmFab + HIV fusion peptide
- 6tyb - rmFab + SIV gp160
- 6oor – raFab + β-2-microglobulin + CD1D
- 6h5n – raFab + malaria protein
- 6qig – raFab + ADAMTS-13
- 6p60 - Fab + HIV fusion peptide - platytthini
- 6i8s - Fab + plasminogen activator inhibitor – Escherichia coli
- 6pis – Fab + TRAAK – Cricetulus migratorius
- 3ld8, 3ldb – AhFab + bifunctional arginine demethylase
- Mouse Fab: protein higher complexes
- 5w3e, 5w3l, 5w3m, 5w3o, 5w3p - mFab C5 + Rhinovirus protein 1 + protein 2 + protein 3 + protein 4
- 3gb7, 2p7t, 2h8p, 2hfe, 2atk, 4wfh, 4wfg, 4wff, 4wfe, 5vk6, 5vke, 5vkh, 6by2, 6by3 - mFab + KcsA K+ channel + ion
- 3or6, 3or7, 3ogc, 3fb7, 3f7v, 3f7y, 3fb5, 3fb6, 3fb8, 3iga, 2itc, 2itd, 2nlj, 2bob, 2boc, 1s5h, 1r3i, 1r3j, 1r3k, 1r3l, 1k4c, 1k4d, 3hpl - mFab + KcsA K+ channel (mutant) + ion
- 2fd6 – mFab ATN-615 + urokinase-type plasminogen activator + urokinase plasminogen receptor
- 4k24 – mFab + urokinase-type plasminogen activator + urokinase plasminogen receptor + vitronectin
- 1j5o – mFab + reverse transcriptase + DNA
- 1qkz – mFab + protein G prime + major outer membrane protein peptide
- 2ibz – mFab + cytochrome bc1 complex + stigmatellin
- 6jmq, 6jmr – mFab + large neutral amino acid transporter + 4f2 cell-surface antigen
- 6qno - mFab + guanine nucleotide-binding protein + transducin + rhodopsin – Cryo EM
- 5w3e, 5w3l, 5w3m, 5w3o, 5w3p - mFab C5 + Rhinovirus protein 1 + protein 2 + protein 3 + protein 4
- Fv Fragments
- Single chain variable fragment (scFv)
- Single chain variable fragment complex
- 3ab0 – mscFv + BCLA protein
- 5jyl, 5jym – mscFv + cadherin
- 5f3j – mscFv + duffy receptor
- 5dfw, 6ejg, 6ejm, 6ek2 – mscFv + CD81
- 2kh2 – mscFv + IL-1 - NMR
- 4yqx – mscFv + IL-2
- 3h3b – mscFv + ERBB2
- 5ogi – mscFv + hexon protein
- 3h3b, 6eqc – mscFv + hexon protein – Cryo EM
- 4f9p, 4f9l – mscFv + BTN3A1
- 5aam, 5aaw – mscFv + Dengue virus envelope protein
- 5kov – mscFv + Astrovirus envelope protein
- 1dzb, 2znx – mscFv + lysozyme
- 1a14, 1nmc – mscFv + neuraminidase
- 1fo0, 1kj2, 1nam – mscFv + TCR + MHC + peptide
- 3ab0 – mscFv + BCLA protein
- Single chain variable fragment complex with small molecule
- Single chain variable fragment complex with peptide
- Single domain antibody VHH or Camelid antibody or nanobody NB80
- 4ppt, 4idl, 1shm, 2xa3, 5sv4, 4w81, 4w70, 4w68, 4tyu, 6ezw, 6f0d, 5nlu, 4krn, 4poy, 1sjv, 1u0q, 3qxu, 3qxw, 4b50, 5tp3, 1sjx, 4qgy, 5h8d, 4b5e, 6fys – LgVHH
- 1g9e – LgVHH - NMR
- 4u05 – LgVHH (mutant)
- 4w2p, 6apo, 6apq – LgVHH anti-marburg virus
- 6ck8 – LgVHH anti-influenza virus
- 3r0m – LgVHH anti-HIV
- 2xxc – ViVHH anti-HIV - vicuna
- 6cwk – ViVHH anti-ricin
- 5u64, 5u65, 1f2x, 1yc7, 5e7b, 5m7q, 5jmr, 3dwt, 3tpk, 3ln9 – cVHH - camel
- 1yc8, 3eak – cVHH (mutant)
- 6itp, 6itq – cVHH anti-cortisol
- 6t2j – syVHH
- 4ppt, 4idl, 1shm, 2xa3, 5sv4, 4w81, 4w70, 4w68, 4tyu, 6ezw, 6f0d, 5nlu, 4krn, 4poy, 1sjv, 1u0q, 3qxu, 3qxw, 4b50, 5tp3, 1sjx, 4qgy, 5h8d, 4b5e, 6fys – LgVHH
- VHH binary complexes
- 1i3u, 1i3v, 1dq0 - LgVHH + hapten
- 3qxt, 3qxv – LgVHH + methotrexate
- 4pou, 1bzq – LgVHH + RNAse 1
- 4nc1, 4nbx, 4nby, 4nbz, 4nc0, 4nc2 – LgVHH + TcdA
- 3k81, 3stb, 4dk3, 4dk6, 4dka, 3k7u, 3k80 – LgVHH + RNA editing complex protein
- 5tok, 5toj – LgVHH + F glycoprotein
- 5boz, 5j57, 5j56, 5e1h, 5sv3 – LgVHH + ricin
- 5hm1 – LgVHH + gp41
- 5o2u – LgVHH + p24
- 4grw – LgVHH + IL-23
- 5nqw – LgVHH + IGE-FC
- 4hep, 4hem – LgVHH + BPP
- 4w2q, 4w2o, 6app – LgVHH + Marburg virus nucleoprotein
- 6fyt, 6fyu, 6fyw – LgVHH + Influenza virus hemagglutinin
- 6ana, 6and, 6ani – LgVHH + mouse antibody
- 4krl, 4krm – LgVHH + EGFR
- 3rjq – LgVHH anti-HIV + gp120
- 2bse – LgVHH + receptor-binding protein
- 4ej1, 4eiz, 4eig – LgVHH + DHFR
- 3p0g, 4lde, 4ldl, 4ldo – LgVHH + adrenergic receptor
- 4n1h, 4m3k, 5lwf – LgVHH + beta-lactamase
- 5m95, 5m94, 4wgw, 4wgv – LgVHH + metal cation transporter
- 5h8o – LgVHH + ASC
- 3k3q – LgVHH + Botox
- 4wem, 4wen, 4weu – LgVHH + adhesin
- 4p2c – LgVHH + Shiga toxin
- 4aq1 – LgVHH + SBSB
- 6h7j, 6h7l, 6h7m, 6h7n – lgVHH + thioredoxin + adrenergic receptor
- 1jto, 1jtp, 1jtt, 1ri8, 1xfp, 1zmy, 1zv5, 1zvh, 4i0c, 1op9, 1mel, 1rjc, 1zvy – cVHH + lysozyme
- 2x89 – cVHH + β-2-microglobulin
- 1kxq, 1kxt, 1kxv – cVHH + α-amylase
- 3qsk, 2p42, 2p43, 2p44, 2p45, 2p46, 2p47, 2p48, 2p49, 2p4a – cVHH + RNAse 1
- 4tvs – viVHH + LAP1
- 4yga – ViVHH + CDPK1
- 5l21 – ViVHH + Botox
- 2xt1, 2xxm – ViVHH anti-HIV + HIV capsid
- 5o04, 5o02, 5o03, 5o05, 5tjw, 5omn, 4x7c, 4x7d, 4x7e, 4x7f, 5m30 – ViVHH + virus capsid
- 2xv6 – ViVHH + p24
- 5hvf, 5hvg, 5hvh – ViVHH + carboxypeptidase
- 5hgg, 5lhr, 5lhq, 5lhp, 5lhn – ViVHH + urokinase-type plasminogen activator
- 5vxm, 5vxj, 5vxk, 5vxl, 5vlj - ViVHH + invasion IpaD
- 5u4l, 4z9k, 4lhj, 4lgp, 6cwg, 5u4m, 6obc, 6obe, 6obg, 6obm, 6obo, 6oca, 6ocd – ViVHH anti-ricin + ricin
- 6knm - cVHH + apelin receptor
- 6sc5, 6sc6, 6sc7, 6sc8, 6sc9 – syVHH + RNF31
- 1i3u, 1i3v, 1dq0 - LgVHH + hapten
- VHH ternary complexes
- 3v0a – LgVHH + BONT/A1 + NTNH
- 3sn6 – LgVHH + adrenergic receptor + guanine nucleotide-binding protein
- 6oya - LgVHH + guanine nucleotide-binding protein + transducin + rhodopsin + GT-alpha/GI1-alpha – Cryo EM
- 4laj - LgVHH + envelope glycoprotein gp120 + CD4
- 4orz – LgVHH + tyrosine protein kinase HCK + NEF
- 4kro, 4krp – LgVHH + antibody + EGFR
- 5j1s, 5j1t – ViVHH + Torsin + LULL1
- 5uk4, 5ukb – ViVHH + virus capsid + RNA
- 5jmo – cVHH + furin + CMK inhibitor
- 5fuc – cVHH + IL-6 + IL-6 receptor
- 6h7o, 6ibl – cVHH + thioredoxin + adrenergic receptor
- 3v0a – LgVHH + BONT/A1 + NTNH
