3D structures of non-human antibody

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(New page: ==3D structures of Antibody== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Fab **3i75, 1nqb, [[1f4...)
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Revision as of 09:52, 9 June 2020

3D structures of Antibody

Updated on 09-June-2020 {{#tree:id=OrganizedByTopic|openlevels=0|

  • Fab
  • Anti-HIV Fab
  • Mouse Fab: small molecule complex
  • Mouse Fab: peptide complex
    • 3e8u - mFab + BNP peptide
    • 2a6d, 2a6i, 2a6j, 2a6k - mFab + peptide
    • 3hr5 – mFab + M1prime peptide
    • 3eys, 3eyu - mFab + amyloid-β-related peptide
    • 3ggw – mFab + carbohydrate-mimetic peptide
    • 3cxd, 3dsf, 5x5x – mFab + osteopontin peptide
    • 2zpk – mFab + proteinase-activated receptor peptide
    • 3ifl, 3ifn, 3ifo, 3ifp - mFab + amyloid peptide
    • 2eh8 - mFab + PRES1 peptide
    • 2brr – mFab + outer membrane protein peptide
    • 1xgy – mFab + rhodopsin peptide
    • 1pz5 – mFab SYA/J6 + peptide
    • 1a3r – mFab + rhinovirus capsid peptide
    • 1cu4 - mFab + prion protein peptide
    • 1fpt – mFab + poliovirus peptide
    • 1jp5 – mFab + HIV-1 protease peptide
    • 1mvu – mFab + glycoprotein
    • 2ap2 – mFab + glycoprotein peptide + C-myc peptide
    • 1frg, 1him, 1hin, 1ifh - mFab + hemagglutinin peptide
    • 1tet – mFab + cholera toxin peptide
    • 5epm – mFab + therapotoxin peptide
    • 5eor, 5eoq – mFab + protein A27 peptide
    • 1i8i, 1i8k – mFab + EGFR peptide
    • 1i8k – mFab + EGFR peptide
    • 1i8i, 1i8k – mFab + EGFR peptide
    • 1i8k – mFab + EGFR peptide
    • 4gag, 4gaj – mFab + genome polyprotein peptide
    • 5nph – mFab + hepatitis virus peptide
    • 5mv4, 5mu0 – mFab + collagen peptide
  • Other Fab: peptide complex
    • 2hh0 – hmFab + prion protein peptide
    • 3bky – hmFab + CD20 peptide
    • 5dmg – rFab + microtubule-associated protein peptide - rabbit
    • 5dd0 – rmFab + peptide
    • 4why, 4wht - raFab + hepatitis peptide
    • 6df1, 6df2 - syFab anti-phosphotyrosine + phosphotyrosine peptide
  • Anti-HIV Fab: peptide complex
  • Mouse Fab: protein complex
  • Mouse Fab: viral protein complex
    • 6a0z, 1eo8, 1ken, 4mhh, 4mhj, 6n5b, 6n5d - mFab anti-influenza virus hemagglutinin
    • 4qnp, 1nca, 1ncb, 1ncc, 1ncd – mFab + influenza neuraminidase
    • 1rvf – mFab 17-IA + intact rhinovirus
    • 3j3o, 3j3p- mFab + poliovirus proteins – cryoEM
    • 6mui, 6mw9, 6mwc, 6mwv, 6mwx - mFab + equine encephalitis virus proteins – cryoEM
    • 6j5g, 6j5f - mFab + tick-borne encephalitis virus protein
    • 6j5d - mFab + louping ILL virus protein – cryoEM
    • 5kvg, 5kvf, 5kve, 5kvd, 5jhl – mFab + zika envelope DIII
    • 3ve0 - mFab + Ebola envelope glycoprotein
    • 5y9t, 5y9c, 5y9f – mFab + papilloma virus capsid protein
    • 4l5f – mFab + dengue virus envelope protein
    • 5zud, 5zuf – mFab + enterovirus caspid proteins – Cryo EM
    • 6tys – mFab + nipa virus fusion protein – Cryo EM
    • 3fmg – mFab + rotavirus glycoprotein VP7
    • 3ixx, 3ixy - mFab E53 + envelope glycoprotein + West Nile virus peptide
    • 1afv – mFab anti-HIV + capsid protein C

Other Fab: protein complex

    • 3ld8, 3ldb – AhFab + bifunctional arginine demethylase
    • 3mj9 – AhFab HL4E10 + JAML
    • 3r08 - AhFab 2C11 + CD3ε
    • 1jps - hmFab D3H44 + tissue factor
    • 5f3h, 5f3b - hmFab + growth factor 8
    • 1pkq – hmFab 8-18C5 + myelin glycoprotein
    • 2b2x – rFab AQC2 + integrin
    • 4ht1 – rFab + TNF ligand 12
    • 6cf2 – rFab + REV
    • 6p65 – rFab + HIV protein – Cryo EM
    • 6osh, 6osv – rFab + ROR2
    • 2r56 – bFab igE + β-lactoglobulin
    • 1g6v – bFab + carbonic anhydrase
    • 4hgk – Fab + albumin – shark
    • 4n9g - rmFab + scaffold
    • 6mqc, 6mqe, 6mqm, 6mqr, 6mqs, 6n16 - rmFab + HIV fusion peptide
    • 6tyb - rmFab + SIV gp160
    • 6oor – raFab + β-2-microglobulin + CD1D
    • 6h5n – raFab + malaria protein
    • 6qig – raFab + ADAMTS-13
    • 6p60 - Fab + HIV fusion peptide - platytthini
    • 6i8s - Fab + plasminogen activator inhibitor – Escherichia coli
    • 6pis – Fab + TRAAK – Cricetulus migratorius
  • Mouse Fab: protein higher complexes
  • Fv Fragments
    • 3dur, 3dus, 3duu, 3dv4, 3dv6 – mFv + Ig-like protein
    • 3hb3 – mFv + cytochrome c oxidase subunit 1-β
    • 1qle - mFv + cytochrome c oxidase
    • 6oik - mFv + AChR + guanine nucleotide-binding protein + transducin – Cryo EM
  • Single chain variable fragment (scFv)
  • Single chain variable fragment complex
    • 3ab0 – mscFv + BCLA protein
    • 5jyl, 5jym – mscFv + cadherin
    • 5f3j – mscFv + duffy receptor
    • 5dfw, 6ejg, 6ejm, 6ek2 – mscFv + CD81
    • 2kh2 – mscFv + IL-1 - NMR
    • 4yqx – mscFv + IL-2
    • 3h3b – mscFv + ERBB2
    • 5ogi – mscFv + hexon protein
    • 3h3b, 6eqc – mscFv + hexon protein – Cryo EM
    • 4f9p, 4f9l – mscFv + BTN3A1
    • 5aam, 5aaw – mscFv + Dengue virus envelope protein
    • 5kov – mscFv + Astrovirus envelope protein
    • 1dzb, 2znx – mscFv + lysozyme
    • 1a14, 1nmc – mscFv + neuraminidase
    • 1fo0, 1kj2, 1nam – mscFv + TCR + MHC + peptide
  • Single chain variable fragment complex with small molecule
    • 5i4f, 5vf2 – mscFv + mannobiose
    • 4h0i – mscFv + mannopyranoside
    • 2cju – mscFv + phOxGABA
    • 2uud – mscFv + hapten
  • Single chain variable fragment complex with peptide
  • Single domain antibody VHH or Camelid antibody or nanobody NB80
  • VHH binary complexes
  • VHH ternary complexes
    • 3v0a – LgVHH + BONT/A1 + NTNH
    • 3sn6 – LgVHH + adrenergic receptor + guanine nucleotide-binding protein
    • 6oya - LgVHH + guanine nucleotide-binding protein + transducin + rhodopsin + GT-alpha/GI1-alpha – Cryo EM
    • 4laj - LgVHH + envelope glycoprotein gp120 + CD4
    • 4orz – LgVHH + tyrosine protein kinase HCK + NEF
    • 4kro, 4krp – LgVHH + antibody + EGFR
    • 5j1s, 5j1t – ViVHH + Torsin + LULL1
    • 5uk4, 5ukb – ViVHH + virus capsid + RNA
    • 5jmo – cVHH + furin + CMK inhibitor
    • 5fuc – cVHH + IL-6 + IL-6 receptor
    • 6h7o, 6ibl – cVHH + thioredoxin + adrenergic receptor

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

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