6t5l
From Proteopedia
(Difference between revisions)
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==MYO-1 from Myroides odoratimimus. Environmental metallo-beta-lactamases exhibit high enzymatic activity under zinc deprivation== | ==MYO-1 from Myroides odoratimimus. Environmental metallo-beta-lactamases exhibit high enzymatic activity under zinc deprivation== | ||
- | <StructureSection load='6t5l' size='340' side='right'caption='[[6t5l]]' scene=''> | + | <StructureSection load='6t5l' size='340' side='right'caption='[[6t5l]], [[Resolution|resolution]] 2.17Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T5L OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6T5L FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6t5l]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ccug_39352 Ccug 39352]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T5L OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6T5L FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6t5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t5l OCA], [http://pdbe.org/6t5l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6t5l RCSB], [http://www.ebi.ac.uk/pdbsum/6t5l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6t5l ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AS202_20055 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=76832 CCUG 39352])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6t5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t5l OCA], [http://pdbe.org/6t5l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6t5l RCSB], [http://www.ebi.ac.uk/pdbsum/6t5l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6t5l ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | BACKGROUND: MBLs form a large and heterogeneous group of bacterial enzymes conferring resistance to beta-lactam antibiotics, including carbapenems. A large environmental reservoir of MBLs has been identified, which can act as a source for transfer into human pathogens. Therefore, structural investigation of environmental and clinically rare MBLs can give new insights into structure-activity relationships to explore the role of catalytic and second shell residues, which are under selective pressure. OBJECTIVES: To investigate the structure and activity of the environmental subclass B1 MBLs MYO-1, SHD-1 and ECV-1. METHODS: The respective genes of these MBLs were cloned into vectors and expressed in Escherichia coli. Purified enzymes were characterized with respect to their catalytic efficiency (kcat/Km). The enzymatic activities and MICs were determined for a panel of different beta-lactams, including penicillins, cephalosporins and carbapenems. Thermostability was measured and structures were solved using X-ray crystallography (MYO-1 and ECV-1) or generated by homology modelling (SHD-1). RESULTS: Expression of the environmental MBLs in E. coli resulted in the characteristic MBL profile, not affecting aztreonam susceptibility and decreasing susceptibility to carbapenems, cephalosporins and penicillins. The purified enzymes showed variable catalytic activity in the order of <5% to approximately 70% compared with the clinically widespread NDM-1. The thermostability of ECV-1 and SHD-1 was up to 8 degrees C higher than that of MYO-1 and NDM-1. Using solved structures and molecular modelling, we identified differences in their second shell composition, possibly responsible for their relatively low hydrolytic activity. CONCLUSIONS: These results show the importance of environmental species acting as reservoirs for MBL-encoding genes. | ||
+ | |||
+ | Structural and biochemical characterization of the environmental MBLs MYO-1, ECV-1 and SHD-1.,Frohlich C, Sorum V, Huber S, Samuelsen O, Berglund F, Kristiansson E, Kotsakis SD, Marathe NP, Larsson DGJ, Leiros HS J Antimicrob Chemother. 2020 May 28. pii: 5848379. doi: 10.1093/jac/dkaa175. PMID:32464640<ref>PMID:32464640</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6t5l" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Ccug 39352]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Frohlich C]] | + | [[Category: Frohlich, C]] |
+ | [[Category: Antimicrobial protein]] | ||
+ | [[Category: Beta-lactamase]] | ||
+ | [[Category: Carbapenemase]] | ||
+ | [[Category: Environmental]] | ||
+ | [[Category: Mbl]] | ||
+ | [[Category: Metallo-beta-lactamase]] |
Revision as of 06:41, 10 June 2020
MYO-1 from Myroides odoratimimus. Environmental metallo-beta-lactamases exhibit high enzymatic activity under zinc deprivation
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