User:Isabela Fonseca de Oliveira Granha/Sandbox 1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: ==Your Heading Here (maybe something like 'Structure')== <StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''> This is a default text for you...)
Line 1: Line 1:
-
==Your Heading Here (maybe something like 'Structure')==
+
=ß-catenin=
-
<StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''>
+
-
This is a default text for your page '''Isabela Fonseca de Oliveira Granha/Sandbox 1'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
+
-
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
+
-
== Function ==
+
ß-catenin plays essential role in cell adherens junctions - connecting cytoplasmic domains and actin cytoskeleton - and in the canonical Wnt pathway - related to embryonic development. Deregulation of this protein activity is associated with cancer and other diseases, for example, the upregulation of its transcriptional activity is stimulated in most colon cancers. Therefore, ß-catenin is an important target for developing treatment for multiple diseases, with considerable interest in its structure. <ref name="xing2009">DOI 10.1016/j.str.2007.12.021</ref>
-
== Disease ==
+
<StructureSection load='2Z6G' size='400' caption='Structure of ß-catenin from Zebrafish'>
-
== Relevance ==
+
==Structure==
-
== Structural highlights ==
+
The zebrafish ß-catenin is constituted by 781 amino acids and contains<scene name='84/848919/Betacateninacoloridaartigo/1'>Text To Be Displayed</scene> a core of 12 armadillo repeats domain and an alpha helix, the <scene name='84/845942/Betacatenin12armr_helixc/4'>helix-C</scene>, at the beginning of the ß-catenin C-terminal domain. The armadillo domain is made of three helices in each repeat and has a particular site which is positively charged, constituting the binding surface for the majority of ß-catenin ligands. <ref name="xing2009" />
-
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
+
<scene name='84/845942/Betacatenin12armr_helixc/5'>The sequences of the protein terminal domains</scene> are less conserved than the armadillo repeat domain and mediate a subset of protein-protein interactions. It is observed that the <scene name='84/845942/Betacatenin12armr_helixc/4'>helix-C constitutes the C-terminal domain</scene>, and the <scene name='84/845942/Betacatenin12armr_helixc/6'>N terminus of armadillo repeat has an alpha helix</scene>. Both <scene name='84/845942/Betacatenin12armr_helixc/5'>N- and C-terminal domains</scene> do not interact with the armadillo repeat domain. <ref name="xing2009" />
 +
 
 +
In contrast to the armadillo ligand-binding structural groove, the C-terminal tail is highly negatively charged. It caps the hydrophobic surface formed by the C-terminal end of the armadillo repeats. Thereby, this structure forms part of the superhelical structure core of ß-catenin together with armadillo repeat domain. <ref name="xing2009" />
 +
It is possible that the helix-C is important for the transactivation of Wnt-responsive genes, but not for the cell adhesion through [[Cadherin|cadherins]]. Hence, this same β-catenin region is also the binding site of transcriptional inhibitors that compete directly with TCF for β-catenin binding.<ref name="xing2009" />
 +
 
 +
==Cell Adhesion==
 +
 
 +
In the absence of Wnt stimulus, the ß-catenin is located at the cytoplasmic side of the membrane as a component of cadherin-based cell-cell connections. [[Cadherin|Cadherins]] are transmembrane glycoproteins calcium-dependent adhesion that can link to ß-catenin through their cytoplasmic tails. The cadherin-catenin complex forms adherens junctions that polarize epithelial tissues and hold the cells together. <ref>Developmental Biology . Eleventh Edition. By Scott F. Gilbert and Michael J. F. Barresi. Sunderland (Massachusetts): Sinauer Associates. ISBN: 978-1-60535-470-5. 2016. </ref>
 +
 
 +
The most known interaction occurs between ß-catenin and [[Cadherin|E-cadherin]] (epithelial cadherin). They are associated while still in the endoplasmic reticulum and interfering with the binding of these proteins results in proteasomal degradation of the [[cadherin]]. First, ⲁ-catenin binds to ß-catenin at the <scene name='84/845942/Betacatenin12armr_helixc118149/1'>first ARM repeat, amino acids 118-149</scene>, resulting in an ⲁ-catenin/ß-catenin heterodimer. This binding stabilizes ß-catenin in the hinged form, and E-cadherin can connect simultaneously. The interaction surface is extensive, covering the entire length of the ß-catenin ARM repeat domain and involving the C-terminal 100 residues of the cadherin cytoplasmic domain. <ref name="valenta2012">DOI 10.1038/emboj.2012.150</ref> <ref name="huber2001">Huber, A. H., & Weis, W. I. (2001). The structure of the β-catenin/E-cadherin complex and the molecular basis of diverse ligand recognition by β-catenin. Cell, 105(3), 391-402.</ref>
 +
 
 +
==The ß-catenin destruction complex==
 +
In baseline conditions without Wnt signaling, ß-catenin concentrations are low in both the cytoplasm and the nucleus. Then, the destruction complex, formed by APC, [[Axin]], CK1ɑ and [[Glycogen synthase kinase 3|GSK]], is active and causes the degradation of the protein through proteasome. Initially it is recognized by APC and [[Axin]] that promote the phosphorylation of Ser45 by CK1ɑ. This facilitates the phosphorylation by [[Cyclin-dependent kinase|GSK]] in the residues of the amino acids Thr41, Ser37 and Ser33. The last two, when phosphorylated, leads to recognition by ß-TrCP and consequently ubiquitination by an [[Ubiquitin protein ligase|E3 ligase]] and degradation by [[Proteasome|26S proteasome]]. <ref name="valenta2012" />
 +
 +
==DNA binding and transcription==
 +
 
 +
The inhibition of ß-catenin destruction leads to increased levels of the protein in cytoplasm and its translocation into the nucleus. ß-catenin interacts with different nuclear pore complex components and ARM repeats <scene name='84/845942/Betacatenin12armr_helixc_r1012/1'>R10-R12</scene> are crucial for its import and export. [[Forkhead box protein|FoxM1]] also facilitates its nuclear translocation directly interacting with ARM repeats <scene name='84/845942/Betacatenin12armr_helixc_r1112/1'>R11-R12</scene>. [[Forkhead box protein|FoxM1]] forms a complex with ß-catenin/TCF on the promoters of Wnt target genes. Once in the nucleus, ß-catenin and its DNA binding partners can activate transcription of Wnt/ß-catenin target genes. Therefore, ß-catenin can only initiates transcription in a multimeric complex, as its central transcriptional activator. <ref name="valenta2012" />
 +
 
 +
TCF transcription factors serve as the main nuclear member of ß-catenin multimeric complex. TCFs bind to DNA enhancers and ß-catenin acts as a link in a chain between them and others transcriptional coactivators. This interaction can be modulated to enhance, repress os switch off ß-catenin-mediated transcription. The majority of these transcription coactivators binds to the <scene name='84/845942/Betacatenin12armr_helixc_r12hc/1'>last ARM repeat and interacts with Helix-C</scene> and many of them can affect chromatin structure. Indeed, it seems that the C-terminus region of ß-catenin coordinates the recruitment and sequential exchange of these proteins. Binding of ß-catenin to TCF is blocked by some proteins such as ICAT, which interacts with the central ARM repeat of ß-catenin. <ref name="valenta2012" />
-
</StructureSection>
 
== References ==
== References ==
<references/>
<references/>

Revision as of 12:07, 18 June 2020

ß-catenin

ß-catenin plays essential role in cell adherens junctions - connecting cytoplasmic domains and actin cytoskeleton - and in the canonical Wnt pathway - related to embryonic development. Deregulation of this protein activity is associated with cancer and other diseases, for example, the upregulation of its transcriptional activity is stimulated in most colon cancers. Therefore, ß-catenin is an important target for developing treatment for multiple diseases, with considerable interest in its structure. [1]

Structure of ß-catenin from Zebrafish

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

Isabela Fonseca de Oliveira Granha

Personal tools