1bn9

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[[Image:1bn9.gif|left|200px]]
[[Image:1bn9.gif|left|200px]]
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{{Structure
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|PDB= 1bn9 |SIZE=350|CAPTION= <scene name='initialview01'>1bn9</scene>
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The line below this paragraph, containing "STRUCTURE_1bn9", creates the "Structure Box" on the page.
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|SITE=
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=DA:2&#39;-DEOXYADENOSINE-5&#39;-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2&#39;-DEOXYCYTIDINE-5&#39;-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5&#39;-MONOPHOSPHATE'>DT</scene>
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{{STRUCTURE_1bn9| PDB=1bn9 | SCENE= }}
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|RELATEDENTRY=
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bn9 OCA], [http://www.ebi.ac.uk/pdbsum/1bn9 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1bn9 RCSB]</span>
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'''RESPONSE ELEMENT OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB BETA'''
'''RESPONSE ELEMENT OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB BETA'''
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==About this Structure==
==About this Structure==
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1BN9 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BN9 OCA].
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BN9 OCA].
==Reference==
==Reference==
Solution structure of the orphan nuclear receptor rev-erb beta response element by 1H, 31P NMR and molecular simulation*., Castagne C, Terenzi H, Zakin MM, Delepierre M, Biochimie. 2000 Aug;82(8):739-48. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11018291 11018291]
Solution structure of the orphan nuclear receptor rev-erb beta response element by 1H, 31P NMR and molecular simulation*., Castagne C, Terenzi H, Zakin MM, Delepierre M, Biochimie. 2000 Aug;82(8):739-48. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11018291 11018291]
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[[Category: Protein complex]]
 
[[Category: Castagne, C.]]
[[Category: Castagne, C.]]
[[Category: Delepierre, M.]]
[[Category: Delepierre, M.]]
[[Category: Terenzi, H.]]
[[Category: Terenzi, H.]]
[[Category: Zakin, M M.]]
[[Category: Zakin, M M.]]
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[[Category: dna]]
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[[Category: Dna]]
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[[Category: orphan nuclear receptor]]
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[[Category: Orphan nuclear receptor]]
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[[Category: response element]]
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[[Category: Response element]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 11:43:35 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:04:26 2008''
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Revision as of 08:43, 2 May 2008

Template:STRUCTURE 1bn9

RESPONSE ELEMENT OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB BETA


Overview

Rev-erb beta is an orphan receptor that binds as a homodimer or as a monomer to DNA. The solution structure of the non-palindromic 15 bp DNA duplex d(TAGAATGTAGGTCAG), the response element of Rev-erb beta for monomeric binding, was determined by 1H and 31P NMR, energy minimization with NMR-derived restraints for distances and NOE back-calculation methods. The refined final structures have the typical overall features of B-type DNA. However, titration of this 15 bp duplex with ReDBD, the DNA binding domain of Rev-erb beta, showed large shifts of imino protons and 31P signals, suggesting major conformational changes.

About this Structure

Full crystallographic information is available from OCA.

Reference

Solution structure of the orphan nuclear receptor rev-erb beta response element by 1H, 31P NMR and molecular simulation*., Castagne C, Terenzi H, Zakin MM, Delepierre M, Biochimie. 2000 Aug;82(8):739-48. PMID:11018291 Page seeded by OCA on Fri May 2 11:43:35 2008

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