This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Chitinase 3D structures

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 8: Line 8:
**[[5hbf]] – hChi - human<br />
**[[5hbf]] – hChi - human<br />
**[[4wjx]], [[4wka]] – hChi catalytic domain<br />
**[[4wjx]], [[4wka]] – hChi catalytic domain<br />
 +
**[[4tx7]] – Chi – yard-long bean<br />
 +
**[[3iwr]], [[2dkv]] – Chi residues 33-340 – Japanese rice<br />
**[[3aro]], [[3b8s]] – VhChi residues 22-597 – ''Vibrio harveyi''<br />
**[[3aro]], [[3b8s]] – VhChi residues 22-597 – ''Vibrio harveyi''<br />
**[[3b9e]] - VhChi residues 22-597 (mutant)<br />
**[[3b9e]] - VhChi residues 22-597 (mutant)<br />
-
**[[1k85]] – BcChi fibronectin domain – ''Bacillus circulans'' – NMR<br />
+
**[[1k85]] – BciChi fibronectin domain – ''Bacillus circulans'' – NMR<br />
-
**[[1itx]] - BcChi catalytic domain<br />
+
**[[1itx]] - BciChi catalytic domain<br />
-
**[[1ed7]] – BcChi chitin-binding domain - NMR<br />
+
**[[1ed7]] – BciChi chitin-binding domain - NMR<br />
**[[1ll6]], [[1ll7]] - CiChi residues 36-427 (mutant) – ''Coccicioides immitis'' <br />
**[[1ll6]], [[1ll7]] - CiChi residues 36-427 (mutant) – ''Coccicioides immitis'' <br />
**[[1d2k]] - CiChi residues 36-427<br />
**[[1d2k]] - CiChi residues 36-427<br />
**[[3n11]] – BcChi – ''Bacillus cereus''<br />
**[[3n11]] – BcChi – ''Bacillus cereus''<br />
-
**[[3iwr]], [[2dkv]] – Chi residues 33-340 – Japanese rice<br />
 
**[[3g6l]] - BoChi residues 21-426 – ''Bionectria ochroleuca''<br />
**[[3g6l]] - BoChi residues 21-426 – ''Bionectria ochroleuca''<br />
**[[3oa5]], [[4dws]], [[4a5q]] – Chi – ''Yersinia entomophaga''<br />
**[[3oa5]], [[4dws]], [[4a5q]] – Chi – ''Yersinia entomophaga''<br />
**[[4mpi]] – HbChi chitin-binding domain – ''Hevea brasiliensis''<br />
**[[4mpi]] – HbChi chitin-binding domain – ''Hevea brasiliensis''<br />
**[[4mst]] – HbChi catalytic domain <br />
**[[4mst]] – HbChi catalytic domain <br />
-
**[[4tx7]] – Chi – yard-long bean<br />
 
*''Chitinase I binary complex''
*''Chitinase I binary complex''
 +
**[[1waw]], [[1wb0]], [[4wk9]], [[4wkf]], [[4wkh]] – hChi catalytic domain + polypeptide – human<br />
 +
**[[1hkk]], [[1hkm]], [[3rm4]], [[3rm8]], [[3rm9]], [[3rme]], [[5nrf]], [[5nra]], [[5nr8]] – hChi catalytic domain + inhibitor<br />
 +
**[[3wl1]], [[3wqv]], [[3wqw]] – cbChi + GlcNAC - corn borer<br />
 +
**[[3wl0]] – cbChi (mutant) + GlcNAC<br />
**[[3arp]], [[3arq]], [[3arr]], [[3ars]], [[3art]], [[3aru]], [[3arv]], [[3arw]], [[3arx]], [[3ary]], [[3arz]] – VhChi residues 22-597 + inhibitor<br />
**[[3arp]], [[3arq]], [[3arr]], [[3ars]], [[3art]], [[3aru]], [[3arv]], [[3arw]], [[3arx]], [[3ary]], [[3arz]] – VhChi residues 22-597 + inhibitor<br />
**[[3as0]], [[3as1]], [[3as2]], [[3as3]] – VhChi residues 22-597 (mutant) + inhibitor<br />
**[[3as0]], [[3as1]], [[3as2]], [[3as3]] – VhChi residues 22-597 (mutant) + inhibitor<br />
Line 33: Line 37:
**[[3n1a]] - BcChi (mutant) + inhibitor<br />
**[[3n1a]] - BcChi (mutant) + inhibitor<br />
**[[3g6m]] - BoChi residues 21-426 + caffeine<br />
**[[3g6m]] - BoChi residues 21-426 + caffeine<br />
-
**[[1waw]], [[1wb0]], [[4wk9]], [[4wkf]], [[4wkh]] – hChi catalytic domain + polypeptide – human<br />
 
-
**[[1hkk]], [[1hkm]], [[3rm4]], [[3rm8]], [[3rm9]], [[3rme]], [[5nrf]], [[5nra]], [[5nr8]] – hChi catalytic domain + inhibitor<br />
 
**[[1ll4]] - CiChi residues 36-427 + inhibitor<br />
**[[1ll4]] - CiChi residues 36-427 + inhibitor<br />
**[[3wl1]], [[3wqv]], [[3wqw]] – cbChi + GlcNAC<br />
**[[3wl1]], [[3wqv]], [[3wqw]] – cbChi + GlcNAC<br />
Line 41: Line 43:
*Chitinase II
*Chitinase II
 +
**[[5y29]] – cbChi catalytic domain 1 residues 1606-1992 <br />
 +
**[[5y2a]] – cbChi catalytic domain 2 residues 2056-2438<br />
 +
**[[1dxj]] – Chi – Jack bean<br />
**[[1e15]], [[3wd0]] - SmChi<br />
**[[1e15]], [[3wd0]] - SmChi<br />
**[[1ogb]], [[1goi]], [[1e6p]] - SmChi (mutant)<br />
**[[1ogb]], [[1goi]], [[1e6p]] - SmChi (mutant)<br />
**[[1kfw]] – Chi catalytic domain – Arthrobacter<br />
**[[1kfw]] – Chi catalytic domain – Arthrobacter<br />
-
**[[1dxj]] – Chi – Jack bean<br />
 
-
**[[5y29]] – OfChi catalytic domain 1 residues 1606-1992 – ''Ostrinia furnacalis''<br />
 
-
**[[5y2a]] – OfChi catalytic domain 2 residues 2056-2438<br />
 
*''Chitinase II binary complex''
*''Chitinase II binary complex''
 +
**[[5y2b]] – cbChi catalytic domain 1 + acetylchitooctaose<br />
 +
**[[5y2c]] – cbChi catalytic domain 2 (mutant) + acetylchitooctaose<br />
**[[1ogg]], [[1ur9]] - SmChi (mutant) + inhibitor<br />
**[[1ogg]], [[1ur9]] - SmChi (mutant) + inhibitor<br />
**[[1e6n]] - SmChi (mutant) + polysaccharide<br />
**[[1e6n]] - SmChi (mutant) + polysaccharide<br />
Line 56: Line 60:
**[[2a3a]], [[2a3b]], [[2a3c]], [[2a3e]] – AfChi + inhibitor<br />
**[[2a3a]], [[2a3b]], [[2a3c]], [[2a3e]] – AfChi + inhibitor<br />
**[[1w1p]], [[1w1t]], [[1w1v]], [[1w1y]], [[1o6i]], [[1h0g]], [[1h0i]] – SmChi + polypeptide<br />
**[[1w1p]], [[1w1t]], [[1w1v]], [[1w1y]], [[1o6i]], [[1h0g]], [[1h0i]] – SmChi + polypeptide<br />
-
**[[5y2b]] – OfChi catalytic domain 1 + acetylchitooctaose<br />
 
-
**[[5y2c]] – OfChi catalytic domain 2 (mutant) + acetylchitooctaose<br />
 
*Chitinase III
*Chitinase III
 +
**[[5wup]] – cbChi residues 1-482<br />
 +
**[[5wv8]] – cbChi residues 1-482 (mutant)<br />
 +
**[[5wv9]] – cbChi residues 1-482 + GlcNAc<br />
 +
**[[5wvb]] – cbChi residues 1-482 (mutant) + GlcNAc<br />
 +
**[[5wus]] – cbChi residues 528-987<br />
 +
**[[5wvf]] – cbChi residues 528-987 (mutant)<br />
 +
**[[5wvh]] – cbChi residues 528-987 + GlcNAc<br />
 +
**[[5wvg]] – cbChi residues 528-987 (mutant) + GlcNAc<br />
 +
**[[4toq]] – Chi - pomegrenate<br />
**[[2dbt]], [[1wvu]] – SgChi residues 30-294 – ''Streptomyces griseus''<br />
**[[2dbt]], [[1wvu]] – SgChi residues 30-294 – ''Streptomyces griseus''<br />
**[[1wvv]] - SgChi residues 30-294 (mutant)<br />
**[[1wvv]] - SgChi residues 30-294 (mutant)<br />
Line 66: Line 77:
**[[2xvp]] – AfChi<br />
**[[2xvp]] – AfChi<br />
**[[2xtk]], [[4tx6]] – AfChi + inhibitor<br />
**[[2xtk]], [[4tx6]] – AfChi + inhibitor<br />
-
**[[4toq]] – Chi - pomegrenate<br />
 
-
**[[5wup]] – OfChi residues 1-482<br />
 
-
**[[5wv8]] – OfChi residues 1-482 (mutant)<br />
 
-
**[[5wv9]] – OfChi residues 1-482 + GlcNAc<br />
 
-
**[[5wvb]] – OfChi residues 1-482 (mutant) + GlcNAc<br />
 
-
**[[5wus]] – OfChi residues 528-987<br />
 
-
**[[5wvf]] – OfChi residues 528-987 (mutant)<br />
 
-
**[[5wvh]] – OfChi residues 528-987 + GlcNAc<br />
 
-
**[[5wvg]] – OfChi residues 528-987 (mutant) + GlcNAc<br />
 
*Chitinase IV
*Chitinase IV
Line 102: Line 104:
*Chitinase A
*Chitinase A
-
**[[3wh1]], [[3wij]] – BcChiA + GlcNAC – ''Bryum coronatum''<br />
 
-
**[[4ij4]] – BcChiA (mutant) + GlcNAC <br />
 
**[[4mnj]], [[4r5e]] – spChiA – sago palm<br />
**[[4mnj]], [[4r5e]] – spChiA – sago palm<br />
**[[4mnk]] – spChiA + GlcNAC<br />
**[[4mnk]] – spChiA + GlcNAC<br />
**[[4mnl]], [[4mnm]] – spChiA (mutant) + GlcNAC<br />
**[[4mnl]], [[4mnm]] – spChiA (mutant) + GlcNAC<br />
 +
**[[5bum]] – ChiA LYSM domain – field horsetail<br />
**[[5dez]] – ApChiA + NAG – ''Autographa polyhedrosis''<br />
**[[5dez]] – ApChiA + NAG – ''Autographa polyhedrosis''<br />
**[[5df0]] – ApChiA + NAG + chitotriothiazoline<br />
**[[5df0]] – ApChiA + NAG + chitotriothiazoline<br />
-
**[[5bum]] – ChiA LYSM domain – field horsetail<br />
 
**[[1edq]], [[1ctn]], [[5zl9]], [[5z7o]], [[5z7n]], [[5z7m]] - SmChiA – ''Serratia marcescens''<br />
**[[1edq]], [[1ctn]], [[5zl9]], [[5z7o]], [[5z7n]], [[5z7m]] - SmChiA – ''Serratia marcescens''<br />
**[[1x6l]], [[1rd6]] – SmChiA (mutant)<br />
**[[1x6l]], [[1rd6]] – SmChiA (mutant)<br />
Line 117: Line 117:
**[[4pxv]], [[5ylg]] – PrChiA LYSM domain – ''Pteris ryukuensis''<br />
**[[4pxv]], [[5ylg]] – PrChiA LYSM domain – ''Pteris ryukuensis''<br />
**[[4rl3]] – PrChiA catalytic domain <br />
**[[4rl3]] – PrChiA catalytic domain <br />
 +
**[[3wh1]], [[3wij]] – BcChiA + GlcNAC – ''Bryum coronatum''<br />
 +
**[[4ij4]] – BcChiA (mutant) + GlcNAC <br />
*Chitinase B
*Chitinase B
Line 137: Line 139:
*Other chitinases
*Other chitinases
 +
**[[3fxy]] - hChi catalytic domain<br />
 +
**[[1lq0]] - hChi residues 22-286<br />
 +
**[[1guv]] - hChi residues 22-387<br />
 +
**[[6g9c]], [[6g9e]] – Chi – pig whipworm<br />
 +
**[[3cql]] – Chi – ''Carica papaya''<br />
 +
**[[1cns]] – Chi – barley<br />
 +
**[[3w3e]] – Chi – cowpea<br />
 +
**[[2uy2]] – yChi residues 22-315 – yeast<br />
**[[1wno]], [[1w9p]] - AfChi<br />
**[[1wno]], [[1w9p]] - AfChi<br />
**[[2dsk]] - PfChi catalytic domain – ''Pyrococcus furiosus''<br />
**[[2dsk]] - PfChi catalytic domain – ''Pyrococcus furiosus''<br />
**[[3afb]] - PfChi catalytic domain (mutant)<br />
**[[3afb]] - PfChi catalytic domain (mutant)<br />
-
**[[1cns]] – Chi – ''Hordeum vulgare''<br />
 
**[[2czn]], [[2rts]] - PfChi chitin-binding domain – NMR<br />
**[[2czn]], [[2rts]] - PfChi chitin-binding domain – NMR<br />
**[[2cwr]] - PfChi chitin-binding domain<br />
**[[2cwr]] - PfChi chitin-binding domain<br />
**[[3ian]] – Chi (mutant) – ''Lactococcus lactis''<br />
**[[3ian]] – Chi (mutant) – ''Lactococcus lactis''<br />
-
**[[3fxy]] - hChi catalytic domain<br />
 
-
**[[1lq0]] - hChi residues 22-286<br />
 
-
**[[1guv]] - hChi residues 22-387<br />
 
**[[3fnd]], [[3co4]] – Chi – ''Bacteroides thetaiotamicron''<br />
**[[3fnd]], [[3co4]] – Chi – ''Bacteroides thetaiotamicron''<br />
-
**[[3cql]] – Chi – ''Carica papaya''<br />
 
**[[2z37]] - BjChi catalytic domain – ''Brassica juncea''<br />
**[[2z37]] - BjChi catalytic domain – ''Brassica juncea''<br />
**[[2z39]] – BjChi catalytic domain (mutant)<br />
**[[2z39]] – BjChi catalytic domain (mutant)<br />
-
**[[2uy2]] – yChi residues 22-315 – yeast<br />
 
**[[4hmc]] – MmChi 60 – ''Moritella marina''<br />
**[[4hmc]] – MmChi 60 – ''Moritella marina''<br />
**[[4mb3]] – MmChi 60 (mutant)<br />
**[[4mb3]] – MmChi 60 (mutant)<br />
-
**[[3w3e]] – Chi – cowpea<br />
 
**[[3w6b]] – RaChi catalytic domain – ''Ralstonia''<br />
**[[3w6b]] – RaChi catalytic domain – ''Ralstonia''<br />
**[[3w6e]] – RaChi catalytic domain (mutant) <br />
**[[3w6e]] – RaChi catalytic domain (mutant) <br />
Line 169: Line 172:
**[[5k2l]] – Chi LYSM domain – ''Volvox carteri''<br />
**[[5k2l]] – Chi LYSM domain – ''Volvox carteri''<br />
**[[6idn]] – Chi – ''Ipomoea carnea''<br />
**[[6idn]] – Chi – ''Ipomoea carnea''<br />
-
**[[6g9c]], [[6g9e]] – Chi – pig whipworm<br />
 
**[[6bt9]] – Chi – ''Bacillus thuringesis''<br />
**[[6bt9]] – Chi – ''Bacillus thuringesis''<br />
**[[5yuq]], [[5xwq]], [[5xwf]] – Chi – ''Rhizomucor miehei''<br />
**[[5yuq]], [[5xwq]], [[5xwf]] – Chi – ''Rhizomucor miehei''<br />
Line 175: Line 177:
*''Other chitinases binary complex''
*''Other chitinases binary complex''
-
**[[3a4w]], [[3a4x]] – PfChi catalytic domain (mutant) + NAG<br />
 
**[[1lg1]] - hChi residues 22-387 + chitobiose<br />
**[[1lg1]] - hChi residues 22-387 + chitobiose<br />
**[[1lg2]] - hChi residues 22-387 + ethylene glycol<br />
**[[1lg2]] - hChi residues 22-387 + ethylene glycol<br />
**[[3fy1]], [[2ybt]], [[2ybu]] - hChi catalytic domain + inhibitor<br />
**[[3fy1]], [[2ybt]], [[2ybu]] - hChi catalytic domain + inhibitor<br />
**[[1hki]], [[1hkj]] - hChi + inhibitor<br />
**[[1hki]], [[1hkj]] - hChi + inhibitor<br />
-
**[[2z38]] - BjChi catalytic domain + Cl<br />
 
**[[2uy3]], [[2uy4]], [[2uy5]] - yChi residues 22-315 + inhibitor<br />
**[[2uy3]], [[2uy4]], [[2uy5]] - yChi residues 22-315 + inhibitor<br />
 +
**[[2z38]] - BjChi catalytic domain + Cl<br />
**[[1w9v]], [[1w9u]] - AfChi + polypeptide<br />
**[[1w9v]], [[1w9u]] - AfChi + polypeptide<br />
**[[4hmd]] – MmChi 60 + intermediate<br />
**[[4hmd]] – MmChi 60 + intermediate<br />
Line 190: Line 191:
**[[5xsv]] - TcChi residues 321-805 – ''Thermococcus chitonophagus''<br />
**[[5xsv]] - TcChi residues 321-805 – ''Thermococcus chitonophagus''<br />
**[[5xsx]], [[5xsw]] - TcChi residues 321-805 + substrate <br />
**[[5xsx]], [[5xsw]] - TcChi residues 321-805 + substrate <br />
 +
**[[3a4w]], [[3a4x]] – PfChi catalytic domain (mutant) + NAG<br />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 09:43, 5 July 2020

3D Structures of Chitinase

Updated on 05-July-2020

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

Retrieved from "http://52.214.119.220/wiki/index.php/Chitinase_3D_structures"
Personal tools