6wan
From Proteopedia
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==Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA== | ==Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA== | ||
- | <StructureSection load='6wan' size='340' side='right'caption='[[6wan]]' scene=''> | + | <StructureSection load='6wan' size='340' side='right'caption='[[6wan]], [[Resolution|resolution]] 2.40Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WAN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6WAN FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6wan]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Aciba Aciba]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WAN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6WAN FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wan FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wan OCA], [http://pdbe.org/6wan PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wan RCSB], [http://www.ebi.ac.uk/pdbsum/6wan PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wan ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HMPREF0023_0548 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=470 ACIBA])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wan FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wan OCA], [http://pdbe.org/6wan PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wan RCSB], [http://www.ebi.ac.uk/pdbsum/6wan PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wan ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | cGAS/DncV-like nucleotidyltransferase (CD-NTase) enzymes are immune sensors that synthesize nucleotide second messengers and initiate antiviral responses in bacterial and animal cells. Here, we discover Enterobacter cloacae CD-NTase-associated protein 4 (Cap4) as a founding member of a diverse family of >2,000 bacterial receptors that respond to CD-NTase signals. Structures of Cap4 reveal a promiscuous DNA endonuclease domain activated through ligand-induced oligomerization. Oligonucleotide recognition occurs through an appended SAVED domain that is an unexpected fusion of two CRISPR-associated Rossman fold (CARF) subunits co-opted from type III CRISPR immunity. Like a lock and key, SAVED effectors exquisitely discriminate 2'-5'- and 3'-5'-linked bacterial cyclic oligonucleotide signals and enable specific recognition of at least 180 potential nucleotide second messenger species. Our results reveal SAVED CARF family proteins as major nucleotide second messenger receptors in CBASS and CRISPR immune defense and extend the importance of linkage specificity beyond mammalian cGAS-STING signaling. | ||
+ | |||
+ | CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection.,Lowey B, Whiteley AT, Keszei AFA, Morehouse BR, Mathews IT, Antine SP, Cabrera VJ, Kashin D, Niemann P, Jain M, Schwede F, Mekalanos JJ, Shao S, Lee ASY, Kranzusch PJ Cell. 2020 Jun 4. pii: S0092-8674(20)30614-0. doi: 10.1016/j.cell.2020.05.019. PMID:32544385<ref>PMID:32544385</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6wan" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Aciba]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Antine | + | [[Category: Antine, S P]] |
- | [[Category: Cabrera V]] | + | [[Category: Cabrera, V]] |
- | [[Category: Keszei | + | [[Category: Keszei, A F.A]] |
- | [[Category: Kranzusch | + | [[Category: Kranzusch, P J]] |
- | [[Category: Lee | + | [[Category: Lee, A S.Y]] |
- | [[Category: Lowey B]] | + | [[Category: Lowey, B]] |
- | [[Category: Mekalanos | + | [[Category: Mekalanos, J J]] |
- | [[Category: Morehouse | + | [[Category: Morehouse, B R]] |
- | [[Category: Schwede F]] | + | [[Category: Schwede, F]] |
- | [[Category: Shao S]] | + | [[Category: Shao, S]] |
- | [[Category: Whiteley | + | [[Category: Whiteley, A T]] |
+ | [[Category: Carf]] | ||
+ | [[Category: Duf4297]] | ||
+ | [[Category: Hydrolase]] | ||
+ | [[Category: Nuclease]] | ||
+ | [[Category: Phage immunity]] | ||
+ | [[Category: Saved]] |
Revision as of 11:43, 22 July 2020
Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA
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Categories: Aciba | Large Structures | Antine, S P | Cabrera, V | Keszei, A F.A | Kranzusch, P J | Lee, A S.Y | Lowey, B | Mekalanos, J J | Morehouse, B R | Schwede, F | Shao, S | Whiteley, A T | Carf | Duf4297 | Hydrolase | Nuclease | Phage immunity | Saved