6smo
From Proteopedia
(Difference between revisions)
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==AntDE:AntF (apo): type II PKS acyl-carrier protein in complex with its ketosynthase bound to the hexaketide== | ==AntDE:AntF (apo): type II PKS acyl-carrier protein in complex with its ketosynthase bound to the hexaketide== | ||
| - | <StructureSection load='6smo' size='340' side='right'caption='[[6smo]]' scene=''> | + | <StructureSection load='6smo' size='340' side='right'caption='[[6smo]], [[Resolution|resolution]] 2.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SMO OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6SMO FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6smo]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_29999 Atcc 29999] and [http://en.wikipedia.org/wiki/Pholl Pholl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SMO OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6SMO FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6smo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6smo OCA], [http://pdbe.org/6smo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6smo RCSB], [http://www.ebi.ac.uk/pdbsum/6smo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6smo ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LKZ:3,5,7,9,11-pentakis(oxidanylidene)dodecanal'>LKZ</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6sm4|6sm4]], [[1tqy|1tqy]]</td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">C6H68_21855 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29488 ATCC 29999]), plu4191 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243265 PHOLL]), plu4190 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243265 PHOLL])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6smo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6smo OCA], [http://pdbe.org/6smo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6smo RCSB], [http://www.ebi.ac.uk/pdbsum/6smo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6smo ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Type II polyketide synthases (PKSs) are multi-enzyme complexes that produce secondary metabolites of medical relevance. Chemical backbones of such polyketides are produced by minimal PKS systems that consist of a malonyl transacylase, an acyl carrier protein and an alpha/beta heterodimeric ketosynthase. Here, we present X-ray structures of all ternary complexes that constitute the minimal PKS system for anthraquinone biosynthesis in Photorhabdus luminescens. In addition, we characterize this invariable core using molecular simulations, mutagenesis experiments and functional assays. We show that malonylation of the acyl carrier protein is accompanied by major structural rearrangements in the transacylase. Principles of an ongoing chain elongation are derived from the ternary complex with a hexaketide covalently linking the heterodimeric ketosynthase with the acyl carrier protein. Our results for the minimal PKS system provide mechanistic understanding of PKSs and a fundamental basis for engineering PKS pathways for future applications. | ||
| + | |||
| + | Structural snapshots of the minimal PKS system responsible for octaketide biosynthesis.,Brauer A, Zhou Q, Grammbitter GLC, Schmalhofer M, Ruhl M, Kaila VRI, Bode HB, Groll M Nat Chem. 2020 Aug;12(8):755-763. doi: 10.1038/s41557-020-0491-7. Epub 2020 Jul, 6. PMID:32632186<ref>PMID:32632186</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6smo" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Acyl carrier protein 3D structures|Acyl carrier protein 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Atcc 29999]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Bode H]] | + | [[Category: Pholl]] |
| - | [[Category: Braeuer A]] | + | [[Category: Bode, H]] |
| - | [[Category: Grammbitter | + | [[Category: Braeuer, A]] |
| - | [[Category: Groll M]] | + | [[Category: Grammbitter, G L.C]] |
| - | [[Category: Kaila | + | [[Category: Groll, M]] |
| - | [[Category: Ruehl M]] | + | [[Category: Kaila, V R.I]] |
| - | [[Category: Schmalhofer M]] | + | [[Category: Ruehl, M]] |
| - | [[Category: Zhou Q]] | + | [[Category: Schmalhofer, M]] |
| + | [[Category: Zhou, Q]] | ||
| + | [[Category: Anthraquinone]] | ||
| + | [[Category: Catalysis]] | ||
| + | [[Category: Chain elongation]] | ||
| + | [[Category: Minimal pks system]] | ||
| + | [[Category: Natural product biosynthesis]] | ||
| + | [[Category: Polyketide]] | ||
| + | [[Category: Protein binding]] | ||
Revision as of 05:52, 5 August 2020
AntDE:AntF (apo): type II PKS acyl-carrier protein in complex with its ketosynthase bound to the hexaketide
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