User:Eric Martz/Cavities tests
From Proteopedia
(Difference between revisions)
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| - | *4 <scene name='31/319439/6zgi_cavities_from_pngj/1'>Test dropping pngj with cavities into SAT</scene>, then saving scene. (No molecule loaded with the SAT "load molecule" tab.) | + | *4 <jmol> |
| + | <jmolLink> | ||
| + | <script> | ||
| + | load "http://proteopedia.org/wiki/images/c/c6/6zgi-cavities.pngj"; | ||
| + | </script> | ||
| + | <text>Green link loading uploaded PNGJ file</text>. | ||
| + | </jmolLink> | ||
| + | </jmol> | ||
| + | |||
| + | |||
| + | *5 <scene name='31/319439/6zgi_cavities_from_pngj/1'>Test dropping pngj with cavities into SAT</scene>, then saving scene. (No molecule loaded with the SAT "load molecule" tab.) | ||
Tested in Firefox (current version) on macOS Mojave, mid-2014 MacBook Pro, 2.2 GHz Intel Core i7. | Tested in Firefox (current version) on macOS Mojave, mid-2014 MacBook Pro, 2.2 GHz Intel Core i7. | ||
| - | * | + | *6 <scene name='31/319439/6zgi_cavities/1'>Cavities in coronavirus spike protein 6zgi</scene>. It took 8.5 min to generate the cavity isosurfaces after I entered the command "isosurface minset 100 interior cavity 3.0 10.0" into the command slot in the SAT. (This command takes ~45 sec in the Jmol Java app which is therefore 11-fold faster for this operation.) After clicking this green link, I waited 11 min and the scene still did not appear. So I think the isosurfaces are being generated again when the green link is clicked. |
</StructureSection> | </StructureSection> | ||
Revision as of 22:42, 12 August 2020
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