Jumonji domain-containing protein 3D structures
From Proteopedia
(Difference between revisions)
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**[[4qxc]] – mJmj1a residues 36-364 + Ni + oxalylglycine + H3 peptide <br /> | **[[4qxc]] – mJmj1a residues 36-364 + Ni + oxalylglycine + H3 peptide <br /> | ||
**[[4qx8]], [[4qx7]], [[4qwn]] – mJmj1a residues 36-364 + Ni + oxoglutarate + H3 peptide <br /> | **[[4qx8]], [[4qx7]], [[4qwn]] – mJmj1a residues 36-364 + Ni + oxoglutarate + H3 peptide <br /> | ||
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| + | * Lysine-specific demethylase 3B; KDM3B; JMJD1B | ||
| + | |||
| + | **[[5r7x]] – hKDM3b jmjc domain 1380-1728 + Mn <br /> | ||
| + | **[[4c8d]] – hKDM3b jmjc domain + Mn + oxalylglycine <br /> | ||
| + | **[[5raa]], [[5rab]], [[5rac]], [[5rad]], [[5rae]], [[5raf]], [[5rag]], [[5rah]], [[5rai]], [[5raj]], [[5rak]], [[5ral]], [[5ram]], [[5ran]], [[5rao]], [[5rap]], [[5raq]], [[5rar]], [[5ras]], [[5rau]], [[5rav]], [[5raw]], [[5rax]], [[5ray]], [[5raz]], [[5rb0]], [[5rb1]], [[5rb2]], [[5rb3]], [[5rb4]], [[5rb5]], [[5rb6]], [[5rb7]], [[6rbj]] – hKDM3b jmjc domain + Mn + inhibitor<br /> | ||
* Lysine-specific demethylase 5B; KDM5B see [[Lysine-specific histone demethylase 3D structures]] | * Lysine-specific demethylase 5B; KDM5B see [[Lysine-specific histone demethylase 3D structures]] | ||
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**[[2yqe]] – hLSD5D ARID domain - NMR<br /> | **[[2yqe]] – hLSD5D ARID domain - NMR<br /> | ||
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| + | * JARID2 | ||
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| + | **[[6c23]], [[6c24]] – hJarid2 in polycomb complex PRC2 – Cryo EM<br /> | ||
| + | **[[6nq3]] – hJarid2 + SUZ12 + RBBP4 + PHF19<br /> | ||
* Lysine-specific demethylase REF6 or Jmjd12 | * Lysine-specific demethylase REF6 or Jmjd12 | ||
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**[[4o64]] – hJmj1b zinc finger domain + Zn <br /> | **[[4o64]] – hJmj1b zinc finger domain + Zn <br /> | ||
| - | **[[ | + | **[[5fv3]] – hJmj1b catalytic domain 26-101+374-770 + Mn + oxalylglycine <br /> |
| + | **[[4c8d]] – hJmj1b jmjc domain 1380-1728 + Mn + oxalylglycine <br /> | ||
**[[5fup]] – hJmj1b catalytic domain + Mn + Zn + oxoglutatate <br /> | **[[5fup]] – hJmj1b catalytic domain + Mn + Zn + oxoglutatate <br /> | ||
**[[5lwb]], [[5lw9]], [[5fzm]], [[5fzl]], [[5fzk]], [[5fzi]], [[5fzh]], [[5fzg]], [[5fzf]], [[5fze]], [[5fzd]], [[5fzc]], [[5fzb]], [[5fza]], [[5fz9]], [[5fz8]], [[5fz7]], [[5fz6]], [[5fz4]], [[5fz3]], [[5fz1]], [[5fz0]], [[5fyz]], [[5fyy]], [[5fyv]], [[5fyu]], [[5fyt]], [[5fyb]], [[5fy9]], [[5fy5]], [[5fy4]], [[5fun]], [[5fpu]], [[5fpl]], [[5a3w]], [[5a3t]], [[5a3p]], [[5a3n]] – hJmj1b catalytic domain + Mn + Zn + inhibitor <br /> | **[[5lwb]], [[5lw9]], [[5fzm]], [[5fzl]], [[5fzk]], [[5fzi]], [[5fzh]], [[5fzg]], [[5fzf]], [[5fze]], [[5fzd]], [[5fzc]], [[5fzb]], [[5fza]], [[5fz9]], [[5fz8]], [[5fz7]], [[5fz6]], [[5fz4]], [[5fz3]], [[5fz1]], [[5fz0]], [[5fyz]], [[5fyy]], [[5fyv]], [[5fyu]], [[5fyt]], [[5fyb]], [[5fy9]], [[5fy5]], [[5fy4]], [[5fun]], [[5fpu]], [[5fpl]], [[5a3w]], [[5a3t]], [[5a3p]], [[5a3n]] – hJmj1b catalytic domain + Mn + Zn + inhibitor <br /> | ||
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**[[4hoo]] – hJmjd2d catalytic domain (mutant) + Ni<br /> | **[[4hoo]] – hJmjd2d catalytic domain (mutant) + Ni<br /> | ||
**[[4d6q]], [[5f5a]], [[5f5c]], [[5f5i]] – hJmjd2d catalytic domain + Ni + inhibitor<br /> | **[[4d6q]], [[5f5a]], [[5f5c]], [[5f5i]] – hJmjd2d catalytic domain + Ni + inhibitor<br /> | ||
| - | **[[6ete]], [[6etg]], [[6ets]], [[6ett]], [[6etu]], [[6etv]], [[6etw]] – hJmjd2d catalytic domain + Ni + Zn + inhibitor<br /> | + | **[[6ete]], [[6etg]], [[6ets]], [[6ett]], [[6etu]], [[6etv]], [[6etw]], [[6f5q]], [[6f5r]], [[6f5s]], [[6f5t]], [[6h0w]], [[6h0x]], [[6h0y]], [[6h0z]], [[6h10]], [[6h11]] – hJmjd2d catalytic domain + Ni + Zn + inhibitor<br /> |
**[[5fp4]], [[5fp8]], [[5fp9]], [[5fpa]], [[5fpb]], [[5fp7]] – hJmjd2d catalytic domain + Fe + inhibitor<br /> | **[[5fp4]], [[5fp8]], [[5fp9]], [[5fpa]], [[5fpb]], [[5fp7]] – hJmjd2d catalytic domain + Fe + inhibitor<br /> | ||
**[[4d6r]], [[4d6s]] – hJmjd2d catalytic domain + Ni + inhibitor + oxalylglycine <br /> | **[[4d6r]], [[4d6s]] – hJmjd2d catalytic domain + Ni + inhibitor + oxalylglycine <br /> | ||
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**[[6f4n]] – hJmjd5 catalytic domain + Mn + α-ketoglutarate <br /> | **[[6f4n]] – hJmjd5 catalytic domain + Mn + α-ketoglutarate <br /> | ||
**[[6f4o]] – hJmjd5 catalytic domain + Mn + succinate <br /> | **[[6f4o]] – hJmjd5 catalytic domain + Mn + succinate <br /> | ||
| + | **[[6i9l]], [[6i9m]], [[6i9n]] – hJmjd5 catalytic domain + Mn + inhibitor <br /> | ||
**[[4aap]] – hJmjd5 catalytic domain + Zn + oxalylglycine <br/ > | **[[4aap]] – hJmjd5 catalytic domain + Zn + oxalylglycine <br/ > | ||
**[[6avs]] – hJmjd5 catalytic domain + Zn + NMMA <br/ > | **[[6avs]] – hJmjd5 catalytic domain + Zn + NMMA <br/ > | ||
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**[[3ld8]] – hJmjd6 catalytic domain + antibody + Fe <br /> | **[[3ld8]] – hJmjd6 catalytic domain + antibody + Fe <br /> | ||
| + | **[[6gdy]] – hJmjd6 catalytic domain + inhibitor + Fe + α-ketoglutarate <br /> | ||
| + | **[[6mev]] – hJmjd6 catalytic domain + L-MMMA + Fe + α-ketoglutarate <br /> | ||
**[[3ldb]] – hJmjd6 catalytic domain + antibody + Fe + α-ketoglutarate <br /> | **[[3ldb]] – hJmjd6 catalytic domain + antibody + Fe + α-ketoglutarate <br /> | ||
Revision as of 08:42, 30 August 2020
3D structures of jumonji domain-containing protein
Updated on 30-August-2020
5pka, 5pk9, 5pk8, 5pk7, 5pk6, 5pk5, 5pk4, 5pk3, 5pk2, 5pk1, 5pk0, 5plj, 5pli, 5plh, 5plg – hJmjd2d catalytic domain + Zn
