6xlp

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==Structure of the essential inner membrane lipopolysaccharide-PbgA complex==
==Structure of the essential inner membrane lipopolysaccharide-PbgA complex==
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<StructureSection load='6xlp' size='340' side='right'caption='[[6xlp]]' scene=''>
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<StructureSection load='6xlp' size='340' side='right'caption='[[6xlp]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XLP OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6XLP FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6xlp]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XLP OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6XLP FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6xlp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xlp OCA], [http://pdbe.org/6xlp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6xlp RCSB], [http://www.ebi.ac.uk/pdbsum/6xlp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6xlp ProSAT]</span></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3PE:1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE'>3PE</scene>, <scene name='pdbligand=OLB:(2S)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLB</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=KDO:3-DEOXY-D-MANNO-OCT-2-ULOSONIC+ACID'>KDO</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=VJ1:'>VJ1</scene>, <scene name='pdbligand=VJ4:'>VJ4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6xlp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xlp OCA], [http://pdbe.org/6xlp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6xlp RCSB], [http://www.ebi.ac.uk/pdbsum/6xlp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6xlp ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Lipopolysaccharide (LPS) resides in the outer membrane of Gram-negative bacteria where it is responsible for barrier function(1,2). LPS can cause death as a result of septic shock, and its lipid A core is the target of polymyxin antibiotics(3,4). Despite the clinical importance of polymyxins and the emergence of multidrug resistant strains(5), our understanding of the bacterial factors that regulate LPS biogenesis is incomplete. Here we characterize the inner membrane protein PbgA and report that its depletion attenuates the virulence of Escherichia coli by reducing levels of LPS and outer membrane integrity. In contrast to previous claims that PbgA functions as a cardiolipin transporter(6-9), our structural analyses and physiological studies identify a lipid A-binding motif along the periplasmic leaflet of the inner membrane. Synthetic PbgA-derived peptides selectively bind to LPS in vitro and inhibit the growth of diverse Gram-negative bacteria, including polymyxin-resistant strains. Proteomic, genetic and pharmacological experiments uncover a model in which direct periplasmic sensing of LPS by PbgA coordinates the biosynthesis of lipid A by regulating the stability of LpxC, a key cytoplasmic biosynthetic enzyme(10-12). In summary, we find that PbgA has an unexpected but essential role in the regulation of LPS biogenesis, presents a new structural basis for the selective recognition of lipids, and provides opportunities for future antibiotic discovery.
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Structure of the essential inner membrane lipopolysaccharide-PbgA complex.,Clairfeuille T, Buchholz KR, Li Q, Verschueren E, Liu P, Sangaraju D, Park S, Noland CL, Storek KM, Nickerson NN, Martin L, Dela Vega T, Miu A, Reeder J, Ruiz-Gonzalez M, Swem D, Han G, DePonte DP, Hunter MS, Gati C, Shahidi-Latham S, Xu M, Skelton N, Sellers BD, Skippington E, Sandoval W, Hanan EJ, Payandeh J, Rutherford ST Nature. 2020 Aug;584(7821):479-483. doi: 10.1038/s41586-020-2597-x. Epub 2020 Aug, 12. PMID:32788728<ref>PMID:32788728</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6xlp" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Clairefeuille T]]
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[[Category: Clairefeuille, T]]
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[[Category: Payandeh J]]
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[[Category: Payandeh, J]]
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[[Category: Lipid binding protein]]
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[[Category: Lipopolysaccharide]]
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[[Category: Lp]]
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[[Category: Membrane protein]]

Revision as of 07:10, 2 September 2020

Structure of the essential inner membrane lipopolysaccharide-PbgA complex

PDB ID 6xlp

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