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Nucleoprotein 3D structures

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**[[1khm]] - h-snRNP K C terminal (mutant) – NMR<br />
**[[1khm]] - h-snRNP K C terminal (mutant) – NMR<br />
**[[2k3k]] – Dm-snRNP U1 A RRM1 – ''Drosophila melanogaster'' – NMR<br />
**[[2k3k]] – Dm-snRNP U1 A RRM1 – ''Drosophila melanogaster'' – NMR<br />
-
**[[2aym]] - Dm-snRNP U1 A<br />
+
**[[2aym]], [[6f4i]] - Dm-snRNP U1 A<br />
**[[2b0g]] - Dm-snRNP U1 A RBD2 – NMR<br />
**[[2b0g]] - Dm-snRNP U1 A RBD2 – NMR<br />
**[[1n9r]], [[1n9s]] – y-snRNP F
**[[1n9r]], [[1n9s]] – y-snRNP F
Line 144: Line 144:
**[[3pgw]], [[3mum]], [[3mur]], [[3mut]], [[3muv]], [[3egz]] - h-snRNP U1 A + DNA riboswitch<br />
**[[3pgw]], [[3mum]], [[3mur]], [[3mut]], [[3muv]], [[3egz]] - h-snRNP U1 A + DNA riboswitch<br />
**[[3mxh]], [[3irw]] - h-snRNP U1 A (mutant) + DNA riboswitch<br />
**[[3mxh]], [[3irw]] - h-snRNP U1 A (mutant) + DNA riboswitch<br />
 +
**[[3bo2]], [[3bo3]], [[3bo4]], [[6sqn]] - h-snRNP U1 A RRM + RNA<br />
**[[3k0j]], [[1drz]], [[1m5k]], [[1m5o]], [[1m5p]], [[1m5v]], [[1u6b]], [[3ucu]], [[3ucz]], [[3ud3]], [[3ud4]] - h-snRNP U1 A (mutant) + RNA<br />
**[[3k0j]], [[1drz]], [[1m5k]], [[1m5o]], [[1m5p]], [[1m5v]], [[1u6b]], [[3ucu]], [[3ucz]], [[3ud3]], [[3ud4]] - h-snRNP U1 A (mutant) + RNA<br />
-
**[[3bo2]], [[3bo3]], [[3bo4]] - h-snRNP U1 A RRM + RNA<br />
+
**[[1aud]] - h-snRNP U1 A (mutant) + RNA - NMR<br />
 +
**[[6lau]] - h-snRNP U1 A (mutant) + RNA + SAH<br />
 +
**[[6lax]], [[6las]], [[6laz]] - h-snRNP U1 A (mutant) + RNA + SAM<br />
**[[1sj3]], [[1sj4]], [[1sjf]], [[1vbx]], [[1vby]], [[1vbz]], [[1vc0]], [[1vc5]], [[1vc6]], [[4prf]] - h-snRNP U1 A (mutant) + Hepatitis ribozyme<br />
**[[1sj3]], [[1sj4]], [[1sjf]], [[1vbx]], [[1vby]], [[1vbz]], [[1vc0]], [[1vc5]], [[1vc6]], [[4prf]] - h-snRNP U1 A (mutant) + Hepatitis ribozyme<br />
**[[3r1h]], [[3r1l]] - h-snRNP U1 A (mutant) + ribozyme<br />
**[[3r1h]], [[3r1l]] - h-snRNP U1 A (mutant) + ribozyme<br />
-
**[[1aud]] - h-snRNP U1 A (mutant) + RNA - NMR<br />
 
**[[3iin]] - h-snRNP U1 A (mutant) + group I intron + DNA<br />
**[[3iin]] - h-snRNP U1 A (mutant) + group I intron + DNA<br />
**[[4c4w]] - h-snRNP A RRM 1 + TSKT K-turn motif + ribosomal protein L7AE<br />
**[[4c4w]] - h-snRNP A RRM 1 + TSKT K-turn motif + ribosomal protein L7AE<br />
Line 157: Line 159:
**[[2oih]], [[2oj3]] - h-snRNP U1 A + HDV ribozyme<br />
**[[2oih]], [[2oj3]] - h-snRNP U1 A + HDV ribozyme<br />
**[[3cul]], [[3cun]] - h-snRNP U1 A (mutant) + aminoacyl-tRNA synthetase ribozyme<br />
**[[3cul]], [[3cun]] - h-snRNP U1 A (mutant) + aminoacyl-tRNA synthetase ribozyme<br />
-
**[[3cw1]] - h-snRNP U1 in spliceosome<br />
 
**[[2ozb]], [[3siu]], [[3siv]] - h-snRNP U4/U6 + NHP2-like protein + RNA<br />
**[[2ozb]], [[3siu]], [[3siv]] - h-snRNP U4/U6 + NHP2-like protein + RNA<br />
-
**[[5xjl]], [[4v98]], [[4f7u]] - h-snRNP 8S assembly<br />
 
-
**[[4m77]], [[4m78]], [[4m7a]], [[4m7d]] - h-snRNP LSM8 assembly<br />
 
**[[2bn5]] - Dm-snRNP U1 70kDa + PSI B box – NMR<br />
**[[2bn5]] - Dm-snRNP U1 70kDa + PSI B box – NMR<br />
 +
**[[6f4h]] - Dm-snRNP U1 A + U1-SL2<br />
 +
**[[6f4j]] - Dm-snRNP U1 A RRM1 + Dm-snRNP U2 A’ <br />
**[[3plu]], [[3plv]] – y-snRNP HINDI domain + ubiquitin-like modifier HUB1<br />
**[[3plu]], [[3plv]] – y-snRNP HINDI domain + ubiquitin-like modifier HUB1<br />
 +
**[[5wxm]] - y-snRNP U3 IMP3 + y-snRNP-associated protein<br />
 +
 +
*'''Small nuclear ribonucleoprotein in large complexes'''
 +
 +
**[[3cw1]] - h-snRNP U1 in spliceosome<br />
 +
**[[5o9z]], [[5z58]], [[6ah0]], [[6ff7]], [[6icz]], [[6id0]], [[6id1]] - h-snRNP in spliceosome – Cryo EM<br />
 +
**[[5xjq]], [[5xjr]], [[5xjs]], [[5xjt]], [[5xju]], [[3s6n]] - h-snRNP in SMN<br />
 +
**[[4m77]], [[4m78]], [[4m7a]], [[4m7d]] - h-snRNP in LSM8 assembly<br />
 +
**[[6v4x]] - h-snRNP in pre-mRNA 3’-end processing – Cryo EM<br />
 +
**[[6y53]], [[6y5q]] - h-snRNP in 17S U2 snRNP – Cryo EM<br />
 +
**[[4f7u]] - m-snRNP in 8S assembly<br />
 +
**[[5wsg]], [[5y88]], [[5ylz]], [[5zwn]], [[5zwo]], [[6bk8]], [[6exn]], [[6g90]], [[6j6g]], [[6j6h]], [[6j6n]], [[6j6q]], [[6n7p]], [[6n7r]], [[6n7x]] - y-snRNP in spliceosome – Cryo EM<br />
-
*'''Heterogenous nuclear ribonucleoprotein'''
+
*'''Heterogenous nuclear ribonucleoprotein'''; Human domains – RRM1 10-93; RRM2 94-194; KH3 385-463; RRM3 654-729
-
**[[1ha1]], [[1l3k]], [[1up1]] - h-hnRNP A1 RRM<br />
+
**[[1ha1]], [[1l3k]], [[1up1]] - h-hnRNP A1 RRM1-2<br />
**[[2lyv]] - h-hnRNP A1 RRM 1-2 – NMR<br />
**[[2lyv]] - h-hnRNP A1 RRM 1-2 – NMR<br />
**[[2up1]] - h-hnRNP A1 RRM 1-2 + DNA<br />
**[[2up1]] - h-hnRNP A1 RRM 1-2 + DNA<br />
-
**[[3s7r]] - h-hnRNP A/B<br />
+
**[[3s7r]] - h-hnRNP A/B RRM2<br />
-
**[[1x4b]] - h-hnRNP A2/B1 RRM – NMR<br />
+
**[[1x4b]] - h-hnRNP A2/B1 RRM1 – NMR<br />
-
**[[1txp]] - h-hnRNP C oligomerization domain – NMR<br />
+
**[[1txp]] - h-hnRNP C oligomerization domain 180-207 (mutant) – NMR<br />
-
**[[1wf2]] - h-hnRNP C1/C2 RRM – NMR<br />
+
**[[1wf2]] - h-hnRNP C1/C2 RRM1 – NMR<br />
-
**[[1hd0]], [[1hd1]], [[1iqt]] - h-hnRNP D0 RRM – NMR<br />
+
**[[1hd0]], [[1hd1]], [[1iqt]] - h-hnRNP D0 RRM2 – NMR<br />
-
**[[2hgl]], [[2hgm]], [[2hgn]] - h-hnRNP F QRRM – NMR<br />
+
**[[2hgl]], [[2hgm]], [[2hgn]] - h-hnRNP F QRRM1 – NMR<br />
-
**[[1wg5]], [[1wez]], [[2lxu]] - h-hnRNP H RRM – NMR<br />
+
**[[1wg5]], [[1wez]], [[2lxu]] - h-hnRNP H RRM1 – NMR<br />
**[[2ad9]], [[2adb]], [[2adc]] - h-hnRNP I – NMR<br />
**[[2ad9]], [[2adb]], [[2adc]] - h-hnRNP I – NMR<br />
-
**[[1zzk]] - h-hnRNP K KH domain<br />
+
**[[1zzk]] - h-hnRNP K KH3 domain<br />
 +
**[[6kor]] - h-hnRNP Q RRM 242-428<br />
**[[3r27]], [[3t08]] - h-hnRNP L RRM<br />
**[[3r27]], [[3t08]] - h-hnRNP L RRM<br />
-
**[[2do0]], [[2dh9]], [[2dgv]] - h-hnRNP M RRM – NMR<br />
+
**[[2do0]], [[2dh9]], [[2dgv]] - h-hnRNP M RRM3 – NMR<br />
-
**[[2dgu]] - h-hnRNP Q RRM – NMR<br />
+
**[[2dgu]] - h-hnRNP Q RRM3 – NMR<br />
-
**[[2dk2]] - h-hnRNP R RRM – NMR<br />
+
**[[2dk2]] - h-hnRNP R RRM3 – NMR<br />
-
**[[3s01]] – m-hnRNP L RRM3 domain – mouse<br />
+
**[[3s01]] – m-hnRNP L RRM3 domain 376-428 – mouse<br />
-
**[[3tyt]] - m-hnRNP L<br />
+
**[[3tyt]] - m-hnRNP L< RRM3br />
-
**[[2e5i]] - m-hnRNP L RRM – NMR<br />
+
**[[2e5i]] - m-hnRNP L RRM2 200-316 – NMR<br />
-
**[[2db1]] - m-hnRNP F RRM – NMR<br />
+
**[[2db1]] - m-hnRNP F RRM1 1-105 – NMR<br />
*Heterogenous nuclear ribonucleoprotein binary complex
*Heterogenous nuclear ribonucleoprotein binary complex
-
**[[2kfy]], [[2kg0]], [[2kg1]] - h-hnRNP F QRRM + DNA – NMR<br />
+
**[[2kfy]], [[2kg0]], [[2kg1]] - h-hnRNP F QRRM2 + DNA – NMR<br />
-
**[[2z5n]], [[2z5o]], [[2ot8]] - h-hnRNP D0 CTD + transportin-1<br />
+
**[[2z5n]], [[2z5o]], [[2ot8]] - h-hnRNP D0 CTD 332-355 + transportin-1<br />
-
**[[1u1k]], [[1u1l]], [[1u1m]], [[1u1n]], [[1u1o]], [[1u1p]], [[1u1q]], [[1u1r]], [[1up1]] - h-hnRNP A1 RRM + DNA<br />
+
**[[1u1k]], [[1u1l]], [[1u1m]], [[1u1n]], [[1u1o]], [[1u1p]], [[1u1q]], [[1u1r]], [[1up1]] - h-hnRNP A1 RRM1-2 + DNA<br />
-
**[[1pgz]], [[1po6]] - h-hnRNP A1 + DNA + inhibitor<br />
+
**[[6dcl]] - h-hnRNP A1 RRM1-2+ RNA<br />
-
**[[1wtb]], [[1x0f]] - h-hnRNP D0 RRM + DNA – NMR<br />
+
**[[1pgz]], [[1po6]] - h-hnRNP A1 RRM1-2+ DNA + inhibitor<br />
-
**[[1zzi]], [[1zzj]] - h-hnRNP K KH domain + DNA<br />
+
**[[1wtb]], [[1x0f]] - h-hnRNP D0 CTD 181-259 + DNA – NMR<br />
-
**[[1j5k]] - h-hnRNP K KH domain + DNA – NMR
+
**[[6dg1]] - h-hnRNP H2 RRM2 – NMR<br />
 +
**[[6dhs]] - h-hnRNP H2 RRM1-2<br />
 +
**[[1zzi]], [[1zzj]] - h-hnRNP K KH3 domain + DNA<br />
 +
**[[1j5k]] - h-hnRNP K KH3 domain + DNA – NMR
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 09:23, 15 September 2020

3D Structures of Nucleoprotein

Updated on 15-September-2020

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Jaime Prilusky, Joel L. Sussman

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