6x9l

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==Crystal Structure of Aldehyde Dehydrogenase C (AldC) mutant (C291A) from Pseudomonas syringae in complexed with NAD+ and Octanal==
==Crystal Structure of Aldehyde Dehydrogenase C (AldC) mutant (C291A) from Pseudomonas syringae in complexed with NAD+ and Octanal==
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<StructureSection load='6x9l' size='340' side='right'caption='[[6x9l]]' scene=''>
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<StructureSection load='6x9l' size='340' side='right'caption='[[6x9l]], [[Resolution|resolution]] 2.52&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6X9L OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6X9L FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6x9l]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Psesm Psesm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6X9L OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6X9L FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6x9l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6x9l OCA], [http://pdbe.org/6x9l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6x9l RCSB], [http://www.ebi.ac.uk/pdbsum/6x9l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6x9l ProSAT]</span></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=OYA:OCTANAL'>OYA</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PSPTO_3644 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223283 PSESM])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6x9l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6x9l OCA], [http://pdbe.org/6x9l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6x9l RCSB], [http://www.ebi.ac.uk/pdbsum/6x9l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6x9l ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Aldehyde dehydrogenases are versatile enzymes that serve a range of biochemical functions. Although traditionally considered metabolic housekeeping enzymes because of their ability to detoxify reactive aldehydes, like those generated from lipid peroxidation damage, the contributions of these enzymes to other biological processes are widespread. For example, the plant pathogen Pseudomonas syringae strain PtoDC3000 uses an indole-3-acetaldehyde dehydrogenase to synthesize the phytohormone indole-3-acetic acid to elude host responses. Here we investigate the biochemical function of AldC from PtoDC3000. Analysis of the substrate profile of AldC suggests that this enzyme functions as a long-chain aliphatic aldehyde dehydrogenase. The 2.5 A resolution x-ray crystal of the AldC C291A mutant in a dead-end complex with octanal and NAD+ reveals an apolar binding site primed for aliphatic aldehyde substrate recognition. Functional characterization of site-directed mutants targeting the substrate and NAD(H) binding sites identify key residues in the active site for ligand interactions, including those in the 'aromatic box' that define the aldehyde binding site. Overall, this study provides molecular insight for understanding the evolution of the prokaryotic aldehyde dehydrogenase superfamily and their diversity of function.
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The plant pathogen enzyme AldC is a long-chain aliphatic aldehyde dehydrogenase.,Lee SG, Harline K, Abar O, Akadri SO, Bastian AG, Chen HS, Duan M, Focht CM, Groziak AR, Kao J, Kottapalli JS, Leong MC, Lin JJ, Liu R, Luo JE, Meyer CM, Mo AF, Pahng SH, Penna V, Raciti CD, Srinath A, Sudhakar S, Tang JD, Cox BR, Holland CK, Cascella B, Cruz W, McClerklin SA, Kunkel BN, Jez JM J Biol Chem. 2020 Aug 12. pii: RA120.014747. doi: 10.1074/jbc.RA120.014747. PMID:32796031<ref>PMID:32796031</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6x9l" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Jez JM]]
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[[Category: Psesm]]
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[[Category: Lee SG]]
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[[Category: Jez, J M]]
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[[Category: Lee, S G]]
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[[Category: Aldc]]
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[[Category: Aldehyde dehydrogenase c]]
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[[Category: Aliphatic aldehyde]]
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[[Category: Oxidoreductase]]

Revision as of 10:18, 16 September 2020

Crystal Structure of Aldehyde Dehydrogenase C (AldC) mutant (C291A) from Pseudomonas syringae in complexed with NAD+ and Octanal

PDB ID 6x9l

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