Phosphodiesterase 3D structures
From Proteopedia
(Difference between revisions)
(New page: == 3D Structures of phosphodiesterase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *cAMP PDE **1loi – r...) |
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*PDE 6 or retinal rod rhodopsin-sensitive cGMP 3’,5’-cyclic PDE | *PDE 6 or retinal rod rhodopsin-sensitive cGMP 3’,5’-cyclic PDE | ||
| - | **[[3dba]] - PDE 6c cGMP-binding domain – chicken<BR /> | ||
**[[5t4x]] - hPDE 6d δ subunit <br /> | **[[5t4x]] - hPDE 6d δ subunit <br /> | ||
**[[3t5g]] – hPDE 6d δ subunit + GTP-binding protein RHEB<BR /> | **[[3t5g]] – hPDE 6d δ subunit + GTP-binding protein RHEB<BR /> | ||
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**[[4jhp]] - hPDE 6d δ subunit + RPGR<br /> | **[[4jhp]] - hPDE 6d δ subunit + RPGR<br /> | ||
**[[4jv6]], [[4jv8]], [[4jvb]], [[4jvf]], [[5ml2]], [[5ml3]], [[5ml4]], [[5ml6]], [[5ml8]], [[5nal]], [[5e80]] - hPDE 6d δ subunit + inhibitor<br /> | **[[4jv6]], [[4jv8]], [[4jvb]], [[4jvf]], [[5ml2]], [[5ml3]], [[5ml4]], [[5ml6]], [[5ml8]], [[5nal]], [[5e80]] - hPDE 6d δ subunit + inhibitor<br /> | ||
| + | **[[3dba]] - PDE 6c cGMP-binding domain – chicken<BR /> | ||
*PDE 7 | *PDE 7 | ||
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**[[3n3z]], [[3qi3]], [[3qi4]] - hPDE 9a catalytic domain (mutant) + inhibitor<br /> | **[[3n3z]], [[3qi3]], [[3qi4]] - hPDE 9a catalytic domain (mutant) + inhibitor<br /> | ||
**[[3dy8]], [[3dyl]], [[3dyn]], [[3dyq]], [[3dys]] - hPDE 9 catalytic domain + GMP<br /> | **[[3dy8]], [[3dyl]], [[3dyn]], [[3dyq]], [[3dys]] - hPDE 9 catalytic domain + GMP<br /> | ||
| - | **[[4gyz]] - mPDE 9 catalytic domain + AMP<br /> | ||
**[[4qge]] - PDE 9 catalytic domain + inhibitor - chimpanzee<br /> | **[[4qge]] - PDE 9 catalytic domain + inhibitor - chimpanzee<br /> | ||
| + | **[[4gyz]] - mPDE 9 catalytic domain + AMP<br /> | ||
*PDE 10 or cAMP and cAMP-inhibited cGMP 3’,5’-cyclic PDE | *PDE 10 or cAMP and cAMP-inhibited cGMP 3’,5’-cyclic PDE | ||
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*Cyclic nucleotide PDE | *Cyclic nucleotide PDE | ||
| - | **[[1fsi]], [[1jh6]] – AtPDE – ''Arabidopsis thaliana''<BR /> | ||
| - | **[[1jh7]] – AtPDE + inhibitor<br /> | ||
**[[1woj]] – hPDE residues 166-379<BR /> | **[[1woj]] – hPDE residues 166-379<BR /> | ||
| - | **[[3jyf]] – KpPDE residues 16-354 <br /> | ||
| - | **[[3v93]] – TcPDE catalytic domain – ''Trypanosoma cruzi''<br /> | ||
**[[2ilx]] - rPDE catalytic domain<BR /> | **[[2ilx]] - rPDE catalytic domain<BR /> | ||
**[[2xmi]], [[2y1p]], [[2y3x]], [[5ae0]] - mPDE catalytic domain <br /> | **[[2xmi]], [[2y1p]], [[2y3x]], [[5ae0]] - mPDE catalytic domain <br /> | ||
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**[[2yq9]], [[4wdb]], [[4wda]] - mPDE catalytic domain (mutant) + 2’-AMP<br /> | **[[2yq9]], [[4wdb]], [[4wda]] - mPDE catalytic domain (mutant) + 2’-AMP<br /> | ||
**[[4wdg]], [[4wdf]] - mPDE catalytic domain (mutant) + 2’-ADP<br /> | **[[4wdg]], [[4wdf]] - mPDE catalytic domain (mutant) + 2’-ADP<br /> | ||
| + | **[[1fsi]], [[1jh6]] – AtPDE – ''Arabidopsis thaliana''<BR /> | ||
| + | **[[1jh7]] – AtPDE + inhibitor<br /> | ||
| + | **[[3jyf]] – KpPDE residues 16-354 <br /> | ||
| + | **[[3v93]] – TcPDE catalytic domain – ''Trypanosoma cruzi''<br /> | ||
**[[3v94]] - TcPDE catalytic domain + inhibitor<br /> | **[[3v94]] - TcPDE catalytic domain + inhibitor<br /> | ||
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**[[4f1h]], [[4fpv]] – zPDE + DNA – zebra fish<br /> | **[[4f1h]], [[4fpv]] – zPDE + DNA – zebra fish<br /> | ||
**[[6ca4]] - zPDE catalytic domain (mutant) + inhibitor <br /> | **[[6ca4]] - zPDE catalytic domain (mutant) + inhibitor <br /> | ||
| + | **[[4f1i]], [[4fva]], [[4gew]] – PDE – ''Caenorhabditis elegans''<br /> | ||
**[[1q32]] – yPDE <BR /> | **[[1q32]] – yPDE <BR /> | ||
**[[3sq3]], [[3sq5]], [[3sq7]], [[3sq8]] – yPDE (mutant) <BR /> | **[[3sq3]], [[3sq5]], [[3sq7]], [[3sq8]] – yPDE (mutant) <BR /> | ||
| - | **[[4f1i]], [[4fva]], [[4gew]] – PDE – ''Caenorhabditis elegans''<br /> | ||
*Glycerophosphodiester PDE | *Glycerophosphodiester PDE | ||
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*PDE | *PDE | ||
| + | **[[5gz4]] – TacPDE – Taiwan cobra<br /> | ||
| + | **[[5gz5]] – TacPDE + AMP <br /> | ||
**[[2ahd]] – PDE – ''Methanocaldococcus jannaschii''<BR /> | **[[2ahd]] – PDE – ''Methanocaldococcus jannaschii''<BR /> | ||
**[[3qvq]] – PDE + P3G– ''Oleispira antarctica''<br /> | **[[3qvq]] – PDE + P3G– ''Oleispira antarctica''<br /> | ||
**[[4b2o]] – BsPDE <br /> | **[[4b2o]] – BsPDE <br /> | ||
**[[4g75]], [[4g76]] – PaPDE <br /> | **[[4g75]], [[4g76]] – PaPDE <br /> | ||
| - | **[[5gz4]] – TcPDE – Taiwan cobra<br /> | ||
| - | **[[5gz5]] – TcPDE + AMP <br /> | ||
**[[5xsi]] – SaPDE catalytic domain <br /> | **[[5xsi]] – SaPDE catalytic domain <br /> | ||
**[[5xt3]] – SaPDE catalytic domain + C-di-GMP<br /> | **[[5xt3]] – SaPDE catalytic domain + C-di-GMP<br /> | ||
Revision as of 08:26, 22 September 2020
3D Structures of phosphodiesterase
Updated on 22-September-2020
