6t5j
From Proteopedia
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==Structure of NUDT15 in complex with inhibitor TH1760== | ==Structure of NUDT15 in complex with inhibitor TH1760== | ||
| - | <StructureSection load='6t5j' size='340' side='right'caption='[[6t5j]]' scene=''> | + | <StructureSection load='6t5j' size='340' side='right'caption='[[6t5j]], [[Resolution|resolution]] 1.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T5J OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6T5J FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6t5j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T5J OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6T5J FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6t5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t5j OCA], [http://pdbe.org/6t5j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6t5j RCSB], [http://www.ebi.ac.uk/pdbsum/6t5j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6t5j ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MKB:6-[4-(1~{H}-indol-5-ylcarbonyl)piperazin-1-yl]sulfonyl-3~{H}-1,3-benzoxazol-2-one'>MKB</scene></td></tr> |
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NUDT15, MTH2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleotide_diphosphatase Nucleotide diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.9 3.6.1.9] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6t5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t5j OCA], [http://pdbe.org/6t5j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6t5j RCSB], [http://www.ebi.ac.uk/pdbsum/6t5j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6t5j ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/NUD15_HUMAN NUD15_HUMAN]] Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can degrade 8-oxo-dGTP in vitro, suggesting that it may remove an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine) from DNA and the nucleotide pool, thereby preventing misincorporation of 8-oxo-dGTP into DNA thus preventing A:T to C:G transversions. Its substrate specificity in vivo however remains unclear (By similarity). May have a role in DNA synthesis and cell cycle progression through the interaction with PCNA.<ref>PMID:19419956</ref> <ref>PMID:22556419</ref> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The NUDIX hydrolase NUDT15 was originally implicated in sanitizing oxidized nucleotides, but was later shown to hydrolyze the active thiopurine metabolites, 6-thio-(d)GTP, thereby dictating the clinical response of this standard-of-care treatment for leukemia and inflammatory diseases. Nonetheless, its physiological roles remain elusive. Here, we sought to develop small-molecule NUDT15 inhibitors to elucidate its biological functions and potentially to improve NUDT15-dependent chemotherapeutics. Lead compound TH1760 demonstrated low-nanomolar biochemical potency through direct and specific binding into the NUDT15 catalytic pocket and engaged cellular NUDT15 in the low-micromolar range. We also employed thiopurine potentiation as a proxy functional readout and demonstrated that TH1760 sensitized cells to 6-thioguanine through enhanced accumulation of 6-thio-(d)GTP in nucleic acids. A biochemically validated, inactive structural analog, TH7285, confirmed that increased thiopurine toxicity takes place via direct NUDT15 inhibition. In conclusion, TH1760 represents the first chemical probe for interrogating NUDT15 biology and potential therapeutic avenues. | ||
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| + | Development of a chemical probe against NUDT15.,Zhang SM, Desroses M, Hagenkort A, Valerie NCK, Rehling D, Carter M, Wallner O, Koolmeister T, Throup A, Jemth AS, Almlof I, Loseva O, Lundback T, Axelsson H, Regmi S, Sarno A, Kramer A, Pudelko L, Brautigam L, Rasti A, Gottmann M, Wiita E, Kutzner J, Schaller T, Kalderen C, Cazares-Korner A, Page BDG, Krimpenfort R, Eshtad S, Altun M, Rudd SG, Knapp S, Scobie M, Homan EJ, Berglund UW, Stenmark P, Helleday T Nat Chem Biol. 2020 Jul 20. pii: 10.1038/s41589-020-0592-z. doi:, 10.1038/s41589-020-0592-z. PMID:32690945<ref>PMID:32690945</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6t5j" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Human]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Carter M]] | + | [[Category: Nucleotide diphosphatase]] |
| - | [[Category: Desroses M]] | + | [[Category: Carter, M]] |
| - | [[Category: Hagenkort A]] | + | [[Category: Desroses, M]] |
| - | [[Category: Helleday T]] | + | [[Category: Hagenkort, A]] |
| - | [[Category: Rehling D]] | + | [[Category: Helleday, T]] |
| - | [[Category: Stenmark P]] | + | [[Category: Rehling, D]] |
| - | [[Category: Valerie | + | [[Category: Stenmark, P]] |
| - | [[Category: Zhang | + | [[Category: Valerie, N C.K]] |
| + | [[Category: Zhang, S M]] | ||
| + | [[Category: Hydrolase]] | ||
| + | [[Category: Inhibitor]] | ||
| + | [[Category: Nudix hydrolase]] | ||
Revision as of 07:36, 30 September 2020
Structure of NUDT15 in complex with inhibitor TH1760
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