6y22

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:46, 30 September 2020) (edit) (undo)
 
Line 1: Line 1:
==RING-DTC domains of Deltex 2, Form 1==
==RING-DTC domains of Deltex 2, Form 1==
-
<StructureSection load='6y22' size='340' side='right'caption='[[6y22]]' scene=''>
+
<StructureSection load='6y22' size='340' side='right'caption='[[6y22]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y22 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Y22 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6y22]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y22 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Y22 FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6y22 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y22 OCA], [http://pdbe.org/6y22 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6y22 RCSB], [http://www.ebi.ac.uk/pdbsum/6y22 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6y22 ProSAT]</span></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DTX2, KIAA1528, RNF58 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/RING-type_E3_ubiquitin_transferase RING-type E3 ubiquitin transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.2.27 2.3.2.27] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6y22 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y22 OCA], [http://pdbe.org/6y22 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6y22 RCSB], [http://www.ebi.ac.uk/pdbsum/6y22 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6y22 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/DTX2_HUMAN DTX2_HUMAN]] Regulator of Notch signaling, a signaling pathway involved in cell-cell communications that regulates a broad spectrum of cell-fate determinations. Probably acts both as a positive and negative regulator of Notch, depending on the developmental and cell context. Mediates the antineural activity of Notch, possibly by inhibiting the transcriptional activation mediated by MATCH1. Functions as a ubiquitin ligase protein in vitro, suggesting that it may regulate the Notch pathway via some ubiquitin ligase activity.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Cross-talk between ubiquitination and ADP-ribosylation regulates spatiotemporal recruitment of key players in many signaling pathways. The DELTEX family ubiquitin ligases (DTX1 to DTX4 and DTX3L) are characterized by a RING domain followed by a C-terminal domain (DTC) of hitherto unknown function. Here, we use two label-free mass spectrometry techniques to investigate the interactome and ubiquitinated substrates of human DTX2 and identify a large proportion of proteins associated with the DNA damage repair pathway. We show that DTX2-catalyzed ubiquitination of these interacting proteins requires PARP1/2-mediated ADP-ribosylation and depends on the DTC domain. Using a combination of structural, biochemical, and cell-based techniques, we show that the DTX2 DTC domain harbors an ADP-ribose-binding pocket and recruits poly-ADP-ribose (PAR)-modified proteins for ubiquitination. This PAR-binding property of DTC domain is conserved across the DELTEX family E3s. These findings uncover a new ADP-ribose-binding domain that facilitates PAR-dependent ubiquitination.
 +
 +
DELTEX2 C-terminal domain recognizes and recruits ADP-ribosylated proteins for ubiquitination.,Ahmed SF, Buetow L, Gabrielsen M, Lilla S, Chatrin C, Sibbet GJ, Zanivan S, Huang DT Sci Adv. 2020 Aug 21;6(34). pii: 6/34/eabc0629. doi: 10.1126/sciadv.abc0629., Print 2020 Aug. PMID:32937373<ref>PMID:32937373</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6y22" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Human]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Buetow L]]
+
[[Category: RING-type E3 ubiquitin transferase]]
-
[[Category: Gabrielssen M]]
+
[[Category: Buetow, L]]
-
[[Category: Huang DT]]
+
[[Category: Gabrielssen, M]]
 +
[[Category: Huang, D T]]
 +
[[Category: E3 ring ligase]]
 +
[[Category: Ligase]]
 +
[[Category: Par-binding]]
 +
[[Category: Ubiquitin]]
 +
[[Category: Ubiquitination]]

Current revision

RING-DTC domains of Deltex 2, Form 1

PDB ID 6y22

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools