6z9m

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Current revision (06:18, 14 October 2020) (edit) (undo)
 
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==Pseudoatomic model of the pre-fusion conformation of glycoprotein B of Herpes simplex virus 1==
==Pseudoatomic model of the pre-fusion conformation of glycoprotein B of Herpes simplex virus 1==
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<StructureSection load='6z9m' size='340' side='right'caption='[[6z9m]]' scene=''>
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<StructureSection load='6z9m' size='340' side='right'caption='[[6z9m]], [[Resolution|resolution]] 9.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z9M OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Z9M FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6z9m]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Hhv-1 Hhv-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z9M OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Z9M FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6z9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z9m OCA], [http://pdbe.org/6z9m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6z9m RCSB], [http://www.ebi.ac.uk/pdbsum/6z9m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6z9m ProSAT]</span></td></tr>
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</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">UL27, gB, HHV1gp041 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10298 HHV-1])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6z9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z9m OCA], [http://pdbe.org/6z9m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6z9m RCSB], [http://www.ebi.ac.uk/pdbsum/6z9m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6z9m ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/A1Z0P7_HHV1 A1Z0P7_HHV1]] Envelope glycoprotein that forms spikes at the surface of virion envelope. Essential for the initial attachment to heparan sulfate moities of the host cell surface proteoglycans. Involved in fusion of viral and cellular membranes leading to virus entry into the host cell. Following initial binding to its host receptors, membrane fusion is mediated by the fusion machinery composed at least of gB and the heterodimer gH/gL. May be involved in the fusion between the virion envelope and the outer nuclear membrane during virion egress.[HAMAP-Rule:MF_04032]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cell entry of enveloped viruses requires specialized viral proteins that mediate fusion with the host membrane by substantial structural rearrangements from a metastable pre- to a stable postfusion conformation. This metastability renders the herpes simplex virus 1 (HSV-1) fusion glycoprotein B (gB) highly unstable such that it readily converts into the postfusion form, thereby precluding structural elucidation of the pharmacologically relevant prefusion conformation. By identification of conserved sequence signatures and molecular dynamics simulations, we devised a mutation that stabilized this form. Functionally locking gB allowed the structural determination of its membrane-embedded prefusion conformation at sub-nanometer resolution and enabled the unambiguous fit of all ectodomains. The resulting pseudo-atomic model reveals a notable conservation of conformational domain rearrangements during fusion between HSV-1 gB and the vesicular stomatitis virus glycoprotein G, despite their very distant phylogeny. In combination with our comparative sequence-structure analysis, these findings suggest common fusogenic domain rearrangements in all class III viral fusion proteins.
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The prefusion structure of herpes simplex virus glycoprotein B.,Vollmer B, Prazak V, Vasishtan D, Jefferys EE, Hernandez-Duran A, Vallbracht M, Klupp BG, Mettenleiter TC, Backovic M, Rey FA, Topf M, Grunewald K Sci Adv. 2020 Sep 25;6(39). pii: 6/39/eabc1726. doi: 10.1126/sciadv.abc1726., Print 2020 Sep. PMID:32978151<ref>PMID:32978151</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6z9m" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Hhv-1]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Backovic M]]
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[[Category: Backovic, M]]
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[[Category: Gruenewald K]]
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[[Category: Gruenewald, K]]
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[[Category: Hernandez-Duran A]]
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[[Category: Hernandez-Duran, A]]
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[[Category: Jefferys EE]]
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[[Category: Jefferys, E E]]
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[[Category: Klupp B]]
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[[Category: Klupp, B]]
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[[Category: Mettenleiter TC]]
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[[Category: Mettenleiter, T C]]
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[[Category: Prazak V]]
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[[Category: Prazak, V]]
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[[Category: Rey FA]]
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[[Category: Rey, F A]]
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[[Category: Topf M]]
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[[Category: Topf, M]]
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[[Category: Vallbracht M]]
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[[Category: Vallbracht, M]]
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[[Category: Vasishtan D]]
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[[Category: Vasishtan, D]]
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[[Category: Vollmer B]]
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[[Category: Vollmer, B]]
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[[Category: Class iii fusion protein]]
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[[Category: Gb]]
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[[Category: Glycoprotein]]
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[[Category: Membrane fusion protein]]
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[[Category: Pre-fusion conformation]]
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[[Category: Transmembrane protein]]
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[[Category: Ul27]]
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[[Category: Viral entry protein]]
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[[Category: Viral protein]]

Current revision

Pseudoatomic model of the pre-fusion conformation of glycoprotein B of Herpes simplex virus 1

PDB ID 6z9m

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