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Sigma factor 3D structures

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**[[5yix]] – SF70 + GCRA - ''Caulobacter crescentus''<br />
**[[5yix]] – SF70 + GCRA - ''Caulobacter crescentus''<br />
**[[6in7]] – SFH + ALGU – Pseudomonas aeruginosa<br />
**[[6in7]] – SFH + ALGU – Pseudomonas aeruginosa<br />
-
**[[6eyd]] – SFA + RNAP subunits α,β,β’,ω - ''Mycobacterium smegmatis'' – Cryo EM <br />
+
**[[6eyd]] – MsSFA + RNAP subunits α,β,β’,ω - ''Mycobacterium smegmatis'' – Cryo EM <br />
**[[6dxo]] – SFA + BLDN – ''Streptomyces venezuelae''<br />
**[[6dxo]] – SFA + BLDN – ''Streptomyces venezuelae''<br />
*Sigma factor complex with protein and DNA and RNA
*Sigma factor complex with protein and DNA and RNA
-
**[[4oio]], [[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[4q5s]] – TtSFA + RNAP subunits α,β,β’,ω + DNA<br />
+
**[[4oio]], [[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[4q5s]] – TtSF-A in reiterative transcription complex <br />
 +
**[[6kqd]], [[6kqe]], [[6kqf]], [[6kqg]], [[6kqh]], [[6kql]], [[6kqm]], [[6kqn]], [[6l74]], [[6lts]] – TtSF-A in initial transcription complex <br />
 +
**[[6wox]], [[6woy]] – TtSF-A in initial transcription complex + CPT<br />
**[[1smy]] – TtSF + RNAP subunits α,β,β’,ω + G4P<br />
**[[1smy]] – TtSF + RNAP subunits α,β,β’,ω + G4P<br />
-
**[[6p71]], [[6p70]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]] – TtSFA + RNAP subunits α,β,β’,ω + DNA + RNA<br />
+
**[[6p71]], [[6p70]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]] – TtSF-A in reiterative transcription complex <br />
**[[5voi]] – TtSFA + TtRNAP subunits α,β,β’,ω + DNA <br />
**[[5voi]] – TtSFA + TtRNAP subunits α,β,β’,ω + DNA <br />
-
**[[5d4c]] – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + CTP + ATP<br />
+
**[[5d4c]] – TtSF-A in transcription initiation complex + CTP + ATP<br />
-
**[[5d4d]] – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + CTP + NAD<br />
+
**[[5d4d]] – TtSF-A in transcription initiation complex + CTP + NAD<br />
-
**[[5d4e]] – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + CTP + dephosphate-CoA<br />
+
**[[5d4e]] – TtSF-A in transcription initiation complex + CTP + dephosphate-CoA<br />
-
**[[3n97]] – TaSFA region 4 + RNAP subunits α + DNA<br />
+
**[[3n97]] – TaSF-A region 4 + RNAP subunits α + DNA<br />
-
**[[4xlp]], [[4xlq]], [[5tjg]] – TaSFA + RNAP subunits α,β,β’,ω + DNA <br />
+
**[[4xlp]], [[4xlq]], [[5tjg]] – TaSF-A in transcription initiation complex<br />
-
**[[1l9z]] – TaSFA + RNAP subunits α,β,β’,ω + DNA – Cryo EM <br />
+
**[[1l9z]] – TaSF-A + RNAP subunits α,β,β’,ω + DNA – Cryo EM <br />
-
**[[4xlr]], [[4xls]] – TaSFA + RNAP subunits α,β,β’,ω + CarD-like transcriptional regulator + DNA <br />
+
**[[4xlr]], [[4xls]] – TaSF-A in transcription initiation complex + CarD-like transcriptional regulator<br />
-
**[[1rio]] - TaSFA region 4 + repression protein CI + DNA<br />
+
**[[1rio]] - TaSF-A region 4 + repression protein CI + DNA<br />
-
**[[3iyd]] – EcSF70 + EcRNAP subunits α,β,β’,ω + catabolite gene activator + DNA<br />
+
**[[6p1k]] – EcSF-70 + EcRNAP subunits α,β,β’,ω - Cryo EM<br />
-
**[[4jk1]], [[4jk2]], [[4jkr]] – EcSF70 + EcRNAP subunits α,β,β’,ω + G4P<br />
+
**[[6vjs]] – EcSF-70 + EcRNAP subunits α,β,β’,ω <br />
-
**[[4yln]], [[4ylo]], [[4ylp]], [[6n62]] – EcSF70 + EcRNAP subunits α,β,β’,ω + DNA<br />
+
**[[3iyd]] – EcSF-70 in transcription initiation complex + catabolite gene activator<br />
-
**[[5nss]] – EcSF54 + EcRNAP subunits α,β,β’,ω + phage shock protein F + DNA - Cryo EM<br />
+
**[[4jk1]], [[4jk2]], [[4jkr]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + G4P<br />
-
**[[5nsr]], [[6gh6]], [[6gh5]], [[6gfw]] – EcSF54 + EcRNAP subunits α,β,β’,ω + DNA - Cryo EM<br />
+
**[[4yln]], [[4ylo]], [[4ylp]], [[6n62]] – EcSF-70 in transcription initiation complex<br />
-
**[[6n61]] – EcSF70 + EcRNAP subunits α,β,β’,ω + capistruin + DNA<br />
+
**[[5nss]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + phage shock protein F + DNA - Cryo EM<br />
-
**[[6n60]] – EcSF70 + EcRNAP subunits α,β,β’,ω + microcin + DNA<br />
+
**[[5nsr]], [[6gh6]], [[6gh5]], [[6gfw]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + DNA - Cryo EM<br />
-
**[[6p18]] – EcSF70 + EcRNAP subunits α,β,β’,ω + protein Q + DNA + RNA<br />
+
**[[6n61]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + capistruin + DNA<br />
-
**[[6jnx]] – EcSF70 + EcRNAP subunits α,β,β’,ω + protein Q + DNA + RNA – Cryo EM<br />
+
**[[6n60]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + microcin + DNA<br />
-
**[[6jbq]] – EcSFE + EcRNAP subunits α,β,β’,ω + DNA + RNA – Cryo EM<br />
+
**[[6p18]] – EcSF-70 in transcription antitermination complex + protein Q<br />
-
**[[5vt0]] – EcSF70 + EcRNAP subunits α,β,β’,ω + RNA – Cryo EM<br />
+
**[[6jnx]] – EcSF-70 in transcription antitermination complex + protein Q – Cryo EM<br />
-
**[[6k4y]] – EcSF70 + EcRNAP subunits α,β,β’,ω + anti-SF + MOTA + DNA – Cryo EM<br />
+
**[[6jbq]] – EcSF-E in transcription initiation complex – Cryo EM<br />
-
**[[6dcf]] – MtSFA + RNAP subunits α,β,β’,ω + RBPA + DNA<br />
+
**[[5vt0]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + RNA – Cryo EM<br />
-
**[[6m7j]] – MtSFA + RNAP subunits α,β,β’,ω + RBPA + DNA – Cryo EM<br />
+
**[[6k4y]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + anti-SF + MOTA + DNA – Cryo EM<br />
-
**[[6eec]], [[6ee8]], [[6edt]] – MtSFA + RNAP subunits α,β,β’,ω + RBPA + CARD + DNA – Cryo EM<br />
+
**[[6ldi]], [[7c17]] – EcSF-70 in transcription activation complex + Cuer – Cryo EM<br />
-
**[[6jcy]], [[6jcx]] – MtSFH + RNAP subunits α,β,β’,ω + DNA + RNA<br />
+
**[[6pb4]], [[6pb5]], [[6pb6]] – EcSF-70 in transcription activation complex + Crp – Cryo EM<br />
-
**[[6dve]], [[6dvd]] – MtSFL + RNAP subunits α,β,β’,ω + DNA<br />
+
**[[6n57]], [[6n58]] – EcSF-70 in transcription initiation complex + Tsar – Cryo EM<br />
-
**[[5zx2]] – MtSFH + RNAP subunits α,β,β’,ω + DNA + RNA<br />
+
**[[6psq]], [[6psr]], [[6pss]], [[6pst]], [[6psu]], [[6psv]], [[6psw]] – EcSF-70 in transcription initiation complex + Trar – Cryo EM<br />
-
**[[6dvc]], [[6dvb]], [[6dv9]] – MtSFL + RNAP subunits α,β,β’,ω + DNA + RNA<br />
+
**[[6n4c]], [[6oul]] – EcSF-70 in transcription initiation complex – Cryo EM<br />
-
**[[5uha]] – MtSFA + MtRNAP subunits α,β,β’,ω + DNA <br />
+
**[[6wrg]] – EcSF-70 in transcription initiation complex + GTP – Cryo EM<br />
-
**[[6c04]] – MtSFA + RNAP subunits α,β,β’,ω + RbpA + DNA - Cryo EM<br />
+
**[[7chw]], [[7khb]] – EcSF-70 in transcription open promoter complex – Cryo EM<br />
-
**[[5uhe]], [[5uhf]] – MtSFA + MtRNAP subunits α,β,β’,ω + DNA + inhibitor<br />
+
**[[7c97]] – EcSF-70 in transcription open promoter complex + SSPA – Cryo EM<br />
-
**[[5tw1]], [[6cce]] – MsSFA + MtRNAP subunits α,β,β’,ω + DNA + peptide - ''Mycobacterium smegmatis''<br />
+
**[[7khi]] – EcSF-70 in transcription open promoter complex + DKSA + G4P – Cryo EM<br />
-
**[[5vi8]] – MsSFA + MsRNAP subunits α,β,β’,ω + DNA <br />
+
**[[7khc]] – EcSF-70 in transcription closed promoter complex – Cryo EM<br />
-
**[[6ccv]] – MsSFA + MtRNAP subunits α,β,β’,ω + DNA + peptide + RbpA <br />
+
**[[6pmi]], [[6pmj]] – EcSF-28 in transcription initiation complex – Cryo EM<br />
 +
**[[6dcf]] – MtSF-A in transcription initiation complex + RBPA<br />
 +
**[[5uha]] – MtSF-A in transcription initiation complex<br />
 +
**[[6c04]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA + DNA - Cryo EM<br />
 +
**[[5uhe]], [[5uhf]] – MtSF-A in transcription initiation complex + inhibitor<br />
 +
**[[6jcy]], [[6jcx]], [[5zx2]] – MtSF-H in transcription initiation complex<br />
 +
**[[6kon]], [[6koo]], [[6kop]], [[6koq]] – MtSF-H in transcription initiation complex <br />
 +
**[[6dve]], [[6dvd]] – MtSF-L in transcription initiation complex<br />
 +
**[[6dvc]], [[6dvb]], [[6dv9]], [[6tye]], [[6tyf]], [[6tyg]] – MtSF-L in transcription initiation complex <br />
 +
**[[5tw1]], [[6cce]] – MsSF-A in transcription initiation complex + peptide - ''Mycobacterium smegmatis''<br />
 +
**[[5vi8]], [[6vvv]] – MsSF-A in transcription initiation complex<br />
 +
**[[6ccv]] – MsSF-A in transcription initiation complex + peptide + RbpA + antibiotic<br />
*Sigma factor complex with protein and DNA and antibiotics
*Sigma factor complex with protein and DNA and antibiotics
-
**[[4oin]], [[4oip]], [[4oiq]], [[4oir]] – TtSFA + RNAP subunits α,β,β’,ω + antibiotic + DNA<br />
+
**[[4oin]], [[4oip]], [[4oiq]], [[4oir]] – TtSF-A + RNAP subunits α,β,β’,ω + antibiotic + DNA<br />
-
**[[6cuu]] – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + antibiotic<br />
+
**[[6cuu]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + antibiotic<br />
-
**[[5uhg]] – MtSFA + MtRNAP subunits α,β,β’,ω + DNA + antibiotic + inhibitor<br />
+
**[[5uhg]] – MtSF-A + MtRNAP subunits α,β,β’,ω + DNA + antibiotic + inhibitor<br />
-
**[[5uhb]] – MtSFA + MtRNAP subunits α,β,β’,ω + DNA + antibiotic<br />
+
**[[5uhb]] – MtSF-A + MtRNAP subunits α,β,β’,ω + DNA + antibiotic<br />
-
**[[6bzo]] – MtSFA + RNAP subunits α,β,β’,ω + RbpA + DNA + antibiotic - Cryo EM<br />
+
**[[6bzo]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA + DNA + antibiotic - Cryo EM<br />
-
**[[6ccf]] – MsSFA + MtRNAP subunits α,β,β’,ω + DNA + peptide + antibiotic<br />
+
**[[6vvx]], [[6vvz]] – MtSF-A in transcription initiation complex + antibiotic – Cryo EM<br />
 +
**[[6vvy]], [[6vw0]] – MtSF-A in transcription open promoter complex + antibiotic – Cryo EM<br />
 +
**[[6m7j]] – MtSF-A + RNAP subunits α,β,β’,ω + RBPA + DNA + antibiotic – Cryo EM<br />
 +
**[[6eec]], [[6ee8]], [[6edt]] – MtSF-A + RNAP subunits α,β,β’,ω + RBPA + CARD + DNA + antibiotic – Cryo EM<br />
*Sigma factor complex with protein, DNA and RNA
*Sigma factor complex with protein, DNA and RNA
-
**[[5vi5]] – MsSFA + MsRNAP subunits α,β,β’,ω + RbpA + DNA + RNA<br />
+
**[[5vi5]] – MsSF-A + MsRNAP subunits α,β,β’,ω + RbpA + DNA + RNA<br />
-
**[[4xln]] – TaSFA + RNAP subunits α,β,β’,ω + DNA + RNA <br />
+
**[[4xln]] – TaSF-A + RNAP subunits α,β,β’,ω + DNA + RNA <br />
-
**[[5ipl]], [[5ipm]], [[5ipn]] – EcSF38 + EcRNAP subunits α,β,β’,ω + DNA + RNA<br />
+
**[[5ipl]], [[5ipm]], [[5ipn]] – EcSF-38 + EcRNAP subunits α,β,β’,ω + DNA + RNA<br />
-
**[[6b6h]] – EcSF70 + EcRNAP subunits α,β,β’,ω + DNA + RNA - Cryo EM<br />
+
**[[6b6h]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + DNA + RNA - Cryo EM<br />
-
**[[5e17]], [[5e18]] – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + RNA<br />
+
**[[5e17]], [[5e18]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + RNA<br />
-
**[[5x22]] – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + RNA + CMPPP<br />
+
**[[5x22]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + RNA + CMPPP<br />
-
**[[5vo8]] – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + RNA + GTP<br />
+
**[[5vo8]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + RNA + GTP<br />
-
**[[5x21]] – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + RNA + antibiotic<br />
+
**[[5x21]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + RNA + antibiotic<br />
-
**[[5i2d]] – TtSFA + TtRNAP subunits α,β,β’,ω + transcriptional regulator + DNA + RNA<br />
+
**[[5i2d]] – TtSF-A + TtRNAP subunits α,β,β’,ω + transcriptional regulator + DNA + RNA<br />
-
**[[5uh5]], [[5uh8]], [[5uh9]] – MtSFA + MtRNAP subunits α,β,β’,ω + DNA + RNA<br />
+
**[[5uh5]], [[5uh8]], [[5uh9]] – MtSF-A + MtRNAP subunits α,β,β’,ω + DNA + RNA<br />
-
**[[5uh6]], [[5uhc]], [[5uhd]], [[5x21]] – MtSFA + TtRNAP subunits α,β,β’,ω + DNA + RNA + antibiotic<br />
+
**[[5uh6]], [[5uhc]], [[5uhd]], [[5x21]] – MtSF-A + TtRNAP subunits α,β,β’,ω + DNA + RNA + antibiotic<br />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 09:17, 4 November 2020

3D structures of sigma factor

Updated on 04-November-2020

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman, Jaime Prilusky

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