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Sigma factor 3D structures

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*Sigma factor
*Sigma factor
-
**[[1ku2]] – TaSFA region 1.2-3.1 – ''Thermus aquaticus''<br />
+
**[[1ku2]] – TaSF-A region 1.2-3.1 – ''Thermus aquaticus''<br />
-
**[[1ku3]] – TaSFA region 4 (mutant)<br />
+
**[[1ku3]] – TaSF-A region 4 (mutant)<br />
-
**[[3les]] – TaSFA residues 93-271<br />
+
**[[3les]] – TaSF-A residues 93-271<br />
-
**[[1sig]] – EcSF70 – ''Escherichia coli''<br />
+
**[[1sig]] – EcSF-70 – ''Escherichia coli''<br />
-
**[[2mao]] – EcSFE region 2 - NMR<br />
+
**[[2mao]] – EcSF-E region 2 - NMR<br />
-
**[[6fi7]] – EcSF38 - NMR<br />
+
**[[6fi7]] – EcSF-38 - NMR<br />
-
**[[1tty]] – TmSF70 region 4 – ''Thermotoga maritima''<br />
+
**[[1tty]] – TmSF-70 region 4 – ''Thermotoga maritima''<br />
-
**[[2k6x]] – TmSF70 region 1.1 (mutant) - NMR<br />
+
**[[2k6x]] – TmSF-70 region 1.1 (mutant) - NMR<br />
-
**[[2ahq]] – AaSF54 C terminal – ''Aquifex aeolicus'' - NMR<br />
+
**[[2ahq]] – AaSF-54 C terminal – ''Aquifex aeolicus'' - NMR<br />
-
**[[2k9l]], [[2k9m]] – AaSF54 core domain - NMR<br />
+
**[[2k9l]], [[2k9m]] – AaSF-54 core domain - NMR<br />
**[[3mzy]] – SFH – ''Fusobacterium nucleatum''<br />
**[[3mzy]] – SFH – ''Fusobacterium nucleatum''<br />
**[[1h3l]] – ScSF N terminal – ''Streptomyces coelicolor''<br />
**[[1h3l]] – ScSF N terminal – ''Streptomyces coelicolor''<br />
-
**[[5fgm]] – ScSFR region 4<br />
+
**[[5fgm]] – ScSF-R region 4<br />
-
**[[5mww]] – BsSFA region 1.1 - ''Bacillus subtilis'' - NMR <br />
+
**[[5mww]] – BsSF-A region 1.1 - ''Bacillus subtilis'' - NMR <br />
-
**[[5xe7]] – MtSFJ – ''Mycobacterium tuberculosis''<br />
+
**[[5xe7]] – MtSF-J – ''Mycobacterium tuberculosis''<br />
*Sigma factor complex with DNA
*Sigma factor complex with DNA
-
**[[3ugo]], [[3ugp]] - TaSFA region 2 + DNA<br />
+
**[[3ugo]], [[3ugp]] - TaSF-A region 2 + DNA<br />
-
**[[1ku7]] – TaSFA region 4 (mutant) + DNA <br />
+
**[[1ku7]] – TaSF-A region 4 (mutant) + DNA <br />
-
**[[4ki2]] - TaSFA region 2-3 + DNA<br />
+
**[[4ki2]] - TaSF-A region 2-3 + DNA<br />
-
**[[2h27]] – EcSFE region 4 + DNA<br />
+
**[[2h27]] – EcSF-E region 4 + DNA<br />
-
**[[2map]] – EcSFE region 2 + DNA - NMR<br />
+
**[[2map]] – EcSF-E region 2 + DNA - NMR<br />
-
**[[2o8k]], [[2o9l]] – AaS54 C terminal + DNA - NMR<br />
+
**[[2o8k]], [[2o9l]] – AaSF-54 C terminal + DNA - NMR<br />
-
**[[5ui5]] – AaSF54 residues 61-398 + DNA <br />
+
**[[5ui5]] – AaSF-54 residues 61-398 + DNA <br />
-
**[[6jhe]] – BsSFW region 4 + DNA <br />
+
**[[6jhe]] – BsSF-W region 4 + DNA <br />
*Sigma factor complex with anti-sigma factor
*Sigma factor complex with anti-sigma factor
-
**[[1tlh]] – EcSF70 region 4 + anti-σ factor<br />
+
**[[1tlh]] – EcSF-70 region 4 + anti-σ factor<br />
-
**[[1rp3]], [[1sc5]] – AaSF28 + anti-σ factor FLGM <br />
+
**[[1rp3]], [[1sc5]] – AaSF-28 + anti-σ factor FLGM <br />
-
**[[6ivu]] – SF1 + anti-σ factor – ''Clostridium thermocellum''<br />
+
**[[6ivu]] – SF-1 + anti-σ factor – ''Clostridium thermocellum''<br />
-
**[[5wur]] – BsSFW + anti-σ factor <br />
+
**[[5wur]] – BsSF-W + anti-σ factor <br />
**[[5uxx]] – SF + anti-σ factor – ''Bartonella quintana''<br />
**[[5uxx]] – SF + anti-σ factor – ''Bartonella quintana''<br />
-
**[[4nqw]] – MtSFK region 4 + anti-σ factor<br />
+
**[[4nqw]] – MtSF-K region 4 + anti-σ factor<br />
*Sigma factor complex with protein
*Sigma factor complex with protein
-
**[[3lev]] – TaSFA residues 93-271 + antibody<br />
+
**[[3lev]] – TaSF-A residues 93-271 + antibody<br />
-
**[[1l9u]] – TaSFA region 1.1-4 + RNAP subunits α,β,β’,ω<br />
+
**[[1l9u]] – TaSF-A region 1.1-4 + RNAP subunits α,β,β’,ω<br />
-
**[[1or7]] – EcSFE + σ-E factor negative regulatory protein <br />
+
**[[1or7]] – EcSF-E + σ-E factor negative regulatory protein <br />
-
**[[4lup]] – EcSFE residues 3-92 + EcSF region 2 <br />
+
**[[4lup]] – EcSF-E residues 3-92 + EcSF region 2 <br />
-
**[[2p7v]] – EcSF70 region 4 + regulator of σ D<br />
+
**[[2p7v]] – EcSF-70 region 4 + regulator of σ D<br />
-
**[[4yg2]], [[5uag]], [[5uaj]], [[5uaq]] – EcSF70 + RNAP subunits α,β,β’,ω <br />
+
**[[4yg2]], [[5uag]], [[5uaj]], [[5uaq]] – EcSF-70 + RNAP subunits α,β,β’,ω <br />
-
**[[5ui8]] – EcSF45 + RNAP subunits α,β,β’,ω <br />
+
**[[5ui8]] – EcSF-45 + RNAP subunits α,β,β’,ω <br />
-
**[[4mex]], [[4kmu]], [[4kn4]], [[4kn7]], [[5uac]], [[5uah]], [[5ual]], [[4zh3]], [[4zh4]] – EcSF70 + RNAP subunits α,β,β’,ω + antibiotic <br />
+
**[[4mex]], [[4kmu]], [[4kn4]], [[4kn7]], [[5uac]], [[5uah]], [[5ual]], [[4zh3]], [[4zh4]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br />
-
**[[4xsx]], [[4xsy]], [[4xsz]] – EcSF70 + RNAP subunits α,β,β’,ω + antibiotic <br />
+
**[[4xsx]], [[4xsy]], [[4xsz]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br />
-
**[[6byu]] – EcSF70 + RNAP subunits α,β,β’,ω + ppApp <br />
+
**[[6byu]] – EcSF-70 + RNAP subunits α,β,β’,ω + ppApp <br />
-
**[[4mey]], [[4ljz]], [[4lk1]], [[6cux]] – EcSF70 + RNAP subunits α,β,β’,ω <br />
+
**[[4mey]], [[4ljz]], [[4lk1]], [[6cux]] – EcSF-70 + RNAP subunits α,β,β’,ω <br />
-
**[[6c9y]], [[6ca0]] – EcSF70 + RNAP subunits α,β,β’,ω - Cryo EM<br />
+
**[[6c9y]], [[6ca0]] – EcSF-70 + RNAP subunits α,β,β’,ω - Cryo EM<br />
-
**[[5byh]] – EcSF45 + RNAP subunits α,β,β’,ω <br />
+
**[[5byh]] – EcSF-45 + RNAP subunits α,β,β’,ω <br />
-
**[[5nwt]] – EcSF54 + RNAP subunits α,β,β’,ω <br />
+
**[[5nwt]] – EcSF-54 + RNAP subunits α,β,β’,ω <br />
-
**[[5w1s]] – EcSF70 + RNAP subunits α,β,β’ + TraR<br />
+
**[[5w1s]] – EcSF-70 + RNAP subunits α,β,β’ + TraR<br />
-
**[[5vsw]] – EcSF70 + RNAP subunits α,β,β’ + DnaK suppressor protein<br />
+
**[[5vsw]] – EcSF-70 + RNAP subunits α,β,β’ + DnaK suppressor protein<br />
-
**[[5w1t]] – EcSF70 + RNAP subunits α,β,β’ + RpoZ + DnaK suppressor protein<br />
+
**[[5w1t]] – EcSF-70 + RNAP subunits α,β,β’ + RpoZ + DnaK suppressor protein<br />
-
**[[4lk0]], [[4llg]], [[4yfk]], [[4yfn]], [[4yfx]], [[4zh2]] – EcSF70 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor<br />
+
**[[4lk0]], [[4llg]], [[4yfk]], [[4yfn]], [[4yfx]], [[4zh2]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor<br />
-
**[[3hug]] – MtSFL + membrane protein <br />
+
**[[3hug]] – MtSF-L + membrane protein <br />
-
**[[4x8k]] – MtSFA region 2 + RBPA<br />
+
**[[4x8k]] – MtSF-A region 2 + RBPA<br />
-
**[[6onu]], [[6ono]] – MtSFA region 4 + WHIB1<br />
+
**[[6onu]], [[6ono]] – MtSF-A region 4 + WHIB1<br />
-
**[[5zx3]] – MtSFH + RNAP subunits α,β,β’,ω <br />
+
**[[5zx3]] – MtSF-H + RNAP subunits α,β,β’,ω <br />
-
**[[6fbv]] – MtSFA + RNAP subunits α,β,β’,ω - SP Cryo EM<br />
+
**[[6fbv]] – MtSF-A + RNAP subunits α,β,β’,ω - SP Cryo EM<br />
-
**[[6c05]], [[6c06]] – MtSFA + RNAP subunits α,β,β’,ω + RbpA - Cryo EM<br />
+
**[[6c05]], [[6c06]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA - Cryo EM<br />
-
**[[3wod]], [[2a6e]], [[2cw0]], [[5tmf]] – TtSFA + RNAP subunits α,β,β’,ω - ''Thermus thermophilus'' <br />
+
**[[3wod]], [[2a6e]], [[2cw0]], [[5tmf]] – TtSF-A + RNAP subunits α,β,β’,ω - ''Thermus thermophilus'' <br />
-
**[[4mq9]], [[2a68]], [[2a69]], [[2a6h]], [[3dxj]], [[3eql]] – TtSF70 + RNAP subunits α,β,β’,ω + antibiotic <br />
+
**[[4mq9]], [[2a68]], [[2a69]], [[2a6h]], [[3dxj]], [[3eql]] – TtSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br />
-
**[[2be5]] – TtSF70 + RNAP subunits α,β,β’,ω + inhibitor<br />
+
**[[2be5]] – TtSF-70 + RNAP subunits α,β,β’,ω + inhibitor<br />
**[[6pfj]], [[6pfv]] – ScSF (mutant) + AMFC protein<br />
**[[6pfj]], [[6pfv]] – ScSF (mutant) + AMFC protein<br />
-
**[[5tmc]] – TtSFA + RNAP subunits α,β,β’,ω + protein + G4P<br />
+
**[[5tmc]] – TtSF-A + RNAP subunits α,β,β’,ω + protein + G4P<br />
-
**[[5xj0]] – TtSFA + RNAP subunits α,β,β’,ω + GP39 + GP76<br />
+
**[[5xj0]] – TtSF-A + RNAP subunits α,β,β’,ω + GP39 + GP76<br />
-
**[[5x22]] – TtSFA + RNAP subunits α,β,β’,ω + GpA + CMPcPP<br />
+
**[[5x22]] – TtSF-A + RNAP subunits α,β,β’,ω + GpA + CMPcPP<br />
-
**[[4lk0]], [[4llg]], [[4yfk]], [[4yfn]], [[4yfx]], [[4zh2]] – EcSF70 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor<br />
+
**[[4lk0]], [[4llg]], [[4yfk]], [[4yfn]], [[4yfx]], [[4zh2]] – EcSF7-0 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor<br />
**[[4cxf]] – SF CNRH + CNRY – ''Cupriavidus metallidurans''<br />
**[[4cxf]] – SF CNRH + CNRY – ''Cupriavidus metallidurans''<br />
-
**[[4g6d]], [[4g8x]], [[4g94]] – SF70 region 4 + Orf067 – ''Staphylococcus aureus''<br />
+
**[[4g6d]], [[4g8x]], [[4g94]] – SF-70 region 4 + Orf067 – ''Staphylococcus aureus''<br />
-
**[[5yix]] – SF70 + GCRA - ''Caulobacter crescentus''<br />
+
**[[5yix]] – SF-70 + GCRA - ''Caulobacter crescentus''<br />
-
**[[6in7]] – SFH + ALGU – Pseudomonas aeruginosa<br />
+
**[[6in7]] – SF-H + ALGU – Pseudomonas aeruginosa<br />
-
**[[6eyd]] – MsSFA + RNAP subunits α,β,β’,ω - ''Mycobacterium smegmatis'' – Cryo EM <br />
+
**[[6eyd]] – MsSF-A + RNAP subunits α,β,β’,ω - ''Mycobacterium smegmatis'' – Cryo EM <br />
-
**[[6dxo]] – SFA + BLDN – ''Streptomyces venezuelae''<br />
+
**[[6dxo]] – SF-A + BLDN – ''Streptomyces venezuelae''<br />
*Sigma factor complex with protein and DNA and RNA
*Sigma factor complex with protein and DNA and RNA
Line 90: Line 90:
**[[1smy]] – TtSF + RNAP subunits α,β,β’,ω + G4P<br />
**[[1smy]] – TtSF + RNAP subunits α,β,β’,ω + G4P<br />
**[[6p71]], [[6p70]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]] – TtSF-A in reiterative transcription complex <br />
**[[6p71]], [[6p70]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]] – TtSF-A in reiterative transcription complex <br />
-
**[[5voi]] – TtSFA + TtRNAP subunits α,β,β’,ω + DNA <br />
+
**[[5voi]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA <br />
**[[5d4c]] – TtSF-A in transcription initiation complex + CTP + ATP<br />
**[[5d4c]] – TtSF-A in transcription initiation complex + CTP + ATP<br />
**[[5d4d]] – TtSF-A in transcription initiation complex + CTP + NAD<br />
**[[5d4d]] – TtSF-A in transcription initiation complex + CTP + NAD<br />

Revision as of 09:22, 4 November 2020

3D structures of sigma factor

Updated on 04-November-2020

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman, Jaime Prilusky

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