6z1p
From Proteopedia
(Difference between revisions)
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==Structure of the mitochondrial ribosome from Tetrahymena thermophila== | ==Structure of the mitochondrial ribosome from Tetrahymena thermophila== | ||
- | <StructureSection load='6z1p' size='340' side='right'caption='[[6z1p]]' scene=''> | + | <StructureSection load='6z1p' size='340' side='right'caption='[[6z1p]], [[Resolution|resolution]] 3.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z1P OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Z1P FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6z1p]] is a 99 chain structure with sequence from [http://en.wikipedia.org/wiki/Tetts Tetts]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z1P OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Z1P FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6z1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z1p OCA], [http://pdbe.org/6z1p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6z1p RCSB], [http://www.ebi.ac.uk/pdbsum/6z1p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6z1p ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
+ | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6z1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z1p OCA], [http://pdbe.org/6z1p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6z1p RCSB], [http://www.ebi.ac.uk/pdbsum/6z1p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6z1p ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/Q24C34_TETTS Q24C34_TETTS]] One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.[ARBA:ARBA00004072] [[http://www.uniprot.org/uniprot/Q22HG3_TETTS Q22HG3_TETTS]] One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.[ARBA:ARBA00002570] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | To understand the steps involved in the evolution of translation, we used Tetrahymena thermophila, a ciliate with high coding capacity of the mitochondrial genome, as the model organism and characterized its mitochondrial ribosome (mitoribosome) using cryo-EM. The structure of the mitoribosome reveals an assembly of 94-ribosomal proteins and four-rRNAs with an additional protein mass of ~700 kDa on the small subunit, while the large subunit lacks 5S rRNA. The structure also shows that the small subunit head is constrained, tRNA binding sites are formed by mitochondria-specific protein elements, conserved protein bS1 is excluded, and bacterial RNA polymerase binding site is blocked. We provide evidence for anintrinsic protein targeting system through visualization of mitochondria-specific mL105 by the exit tunnel that would facilitate the recruitment of a nascent polypeptide. Functional protein uS3m is encoded by three complementary genes from the nucleus and mitochondrion, establishing a link between genetic drift and mitochondrial translation. Finally, we reannotated nine open reading frames in the mitochondrial genome that code for mitoribosomal proteins. | ||
+ | |||
+ | Ciliate mitoribosome illuminates evolutionary steps of mitochondrial translation.,Tobiasson V, Amunts A Elife. 2020 Jun 18;9. pii: 59264. doi: 10.7554/eLife.59264. PMID:32553108<ref>PMID:32553108</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6z1p" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Amunts A]] | + | [[Category: Tetts]] |
- | [[Category: Tobiasson V]] | + | [[Category: Amunts, A]] |
+ | [[Category: Tobiasson, V]] | ||
+ | [[Category: Ciliate]] | ||
+ | [[Category: Mitochondria]] | ||
+ | [[Category: Mitochondrial ribosome]] | ||
+ | [[Category: Ribosome]] | ||
+ | [[Category: Tetrahymena]] |
Revision as of 08:33, 11 November 2020
Structure of the mitochondrial ribosome from Tetrahymena thermophila
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