7bwc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Bombyx mori GH32 beta-fructofuranosidase BmSUC1 mutant D63A in complex with sucrose==
==Bombyx mori GH32 beta-fructofuranosidase BmSUC1 mutant D63A in complex with sucrose==
-
<StructureSection load='7bwc' size='340' side='right'caption='[[7bwc]]' scene=''>
+
<StructureSection load='7bwc' size='340' side='right'caption='[[7bwc]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BWC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7BWC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7bwc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bommo Bommo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BWC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7BWC FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7bwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bwc OCA], [http://pdbe.org/7bwc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7bwc RCSB], [http://www.ebi.ac.uk/pdbsum/7bwc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7bwc ProSAT]</span></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BmSuc1, Suc1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7091 BOMMO])</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-fructofuranosidase Beta-fructofuranosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.26 3.2.1.26] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7bwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bwc OCA], [http://pdbe.org/7bwc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7bwc RCSB], [http://www.ebi.ac.uk/pdbsum/7bwc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7bwc ProSAT]</span></td></tr>
</table>
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Sucrose-hydrolyzing enzymes are largely divided into beta-fructofuranosidase and sucrose alpha-glucosidase. The domestic silkworm Bombyx mori possesses both enzymes, BmSUC1 and BmSUH, belonging to the glycoside hydrolase family 32 (GH32) and GH13, respectively. BmSUC1 was presumed to be acquired by horizontal gene transfer from bacteria based on phylogenetic analysis and related to tolerance to sugar-mimic alkaloids contained in mulberry latex. Here we investigated the substrate specificity of recombinant BmSUC1 that can hydrolyze not only sucrose but also fructooligosaccharides and fructans, and revealed that the enzyme was competitively inhibited by 1,4-dideoxy-1,4-imino-D-arabinitol, one of the alkaloids. Moreover, the crystal structures of BmSUC1 in apo form and complex with sucrose were determined, and the active site pocket was shallow and suitable for shorter substrates but was related to more relaxed substrate specificity than the strict sucrose alpha-glucosidase BmSUH. Considering together with the distribution of BmSUC1-orthologous genes in many lepidopterans, our results suggest that BmSUC1 contributes to the digestion of fructooligosaccharides and fructans derived from feed plants.
 +
 +
Structural insight into the substrate specificity of Bombyx mori beta-fructofuranosidase belonging to the glycoside hydrolase family 32.,Miyazaki T, Oba N, Park EY Insect Biochem Mol Biol. 2020 Oct 24;127:103494. doi: 10.1016/j.ibmb.2020.103494. PMID:33132139<ref>PMID:33132139</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 7bwc" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Beta-fructofuranosidase]]
 +
[[Category: Bommo]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Miyazaki T]]
+
[[Category: Miyazaki, T]]
-
[[Category: Oba N]]
+
[[Category: Oba, N]]
 +
[[Category: Beta-propeller]]
 +
[[Category: Glycoside hydrolase]]
 +
[[Category: Horizontal gene transfer]]
 +
[[Category: Hydrolase]]
 +
[[Category: Sucrose]]

Revision as of 09:57, 18 November 2020

Bombyx mori GH32 beta-fructofuranosidase BmSUC1 mutant D63A in complex with sucrose

PDB ID 7bwc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools