This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4abf
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
<StructureSection load='4abf' size='340' side='right'caption='[[4abf]], [[Resolution|resolution]] 1.30Å' scene=''> | <StructureSection load='4abf' size='340' side='right'caption='[[4abf]], [[Resolution|resolution]] 1.30Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[4abf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ABF OCA]. For a <b>guided tour on the structure components</b> use [http:// | + | <table><tr><td colspan='2'>[[4abf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ABF OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=4ABF FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=513:1-(5-BROMO-1-BENZOTHIOPHEN-3-YL)METHANAMINE'>513</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=513:1-(5-BROMO-1-BENZOTHIOPHEN-3-YL)METHANAMINE'>513</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ptp|5ptp]], [[1o2s|1o2s]], [[1o2t|1o2t]], [[1bjv|1bjv]], [[1c2d|1c2d]], [[1c2e|1c2e]], [[1mts|1mts]], [[1tps|1tps]], [[1tng|1tng]], [[1o2m|1o2m]], [[1c1p|1c1p]], [[1jrt|1jrt]], [[2btc|2btc]], [[1c1t|1c1t]], [[1tnk|1tnk]], [[1o2x|1o2x]], [[1d6r|1d6r]], [[1c2h|1c2h]], [[1o38|1o38]], [[1utp|1utp]], [[1f2s|1f2s]], [[1gi1|1gi1]], [[4aba|4aba]], [[1tio|1tio]], [[1v2k|1v2k]], [[1tpo|1tpo]], [[2blw|2blw]], [[1v2o|1v2o]], [[2fx6|2fx6]], [[1c1n|1c1n]], [[1y3u|1y3u]], [[1y3x|1y3x]], [[1c5p|1c5p]], [[1o2i|1o2i]], [[1c2j|1c2j]], [[4abj|4abj]], [[1n6x|1n6x]], [[1c5u|1c5u]], [[1o3m|1o3m]], [[1v2v|1v2v]], [[1k1o|1k1o]], [[1ghz|1ghz]], [[1y5u|1y5u]], [[1qb1|1qb1]], [[2fi3|2fi3]], [[2ptc|2ptc]], [[1k1l|1k1l]], [[2tgd|2tgd]], [[1y5b|1y5b]], [[1c5t|1c5t]], [[1p2j|1p2j]], [[1smf|1smf]], [[1btp|1btp]], [[2ayw|2ayw]], [[1ppe|1ppe]], [[1btx|1btx]], [[2by8|2by8]], [[1gi6|1gi6]], [[1cu8|1cu8]], [[1ntp|1ntp]], [[1c5q|1c5q]], [[1qb9|1qb9]], [[1g3e|1g3e]], [[1o35|1o35]], [[3btk|3btk]], [[1ejm|1ejm]], [[3ptn|3ptn]], [[1uto|1uto]], [[1o3h|1o3h]], [[2fi4|2fi4]], [[1o2k|1o2k]], [[1o3i|1o3i]], [[1y3y|1y3y]], [[1ppc|1ppc]], [[1o3d|1o3d]], [[1o2y|1o2y]], [[1j8a|1j8a]], [[1c1q|1c1q]], [[4abb|4abb]], [[1o2l|1o2l]], [[1y59|1y59]], [[2tgt|2tgt]], [[3btm|3btm]], [[1v2s|1v2s]], [[1o2o|1o2o]], [[1xui|1xui]], [[1ql8|1ql8]], [[3btf|3btf]], [[1s0q|1s0q]], [[1o2w|1o2w]], [[1bju|1bju]], [[4abe|4abe]], [[1qb6|1qb6]], [[1gi5|1gi5]], [[1o39|1o39]], [[1tab|1tab]], [[1gi2|1gi2]], [[1g3d|1g3d]], [[4abi|4abi]], [[1cu7|1cu7]], [[1tpa|1tpa]], [[1o2h|1o2h]], [[2ftl|2ftl]], [[1mtv|1mtv]], [[1v2r|1v2r]], [[1o3l|1o3l]], [[1o2r|1o2r]], [[1tx8|1tx8]], [[1v2j|1v2j]], [[3bth|3bth]], [[1c2i|1c2i]], [[1o3c|1o3c]], [[1o3k|1o3k]], [[1ezx|1ezx]], [[1k1m|1k1m]], [[1utn|1utn]], [[1ce5|1ce5]], [[2by7|2by7]], [[1o32|1o32]], [[1k1i|1k1i]], [[1yp9|1yp9]], [[1max|1max]], [[1tgc|1tgc]], [[1oph|1oph]], [[3bte|3bte]], [[1v2n|1v2n]], [[3tpi|3tpi]], [[1eb2|1eb2]], [[2tio|2tio]], [[2tld|2tld]], [[1bty|1bty]], [[2ptn|2ptn]], [[2fi5|2fi5]], [[4abh|4abh]], [[1v2t|1v2t]], [[2tga|2tga]], [[1c2l|1c2l]], [[1o2v|1o2v]], [[1o36|1o36]], [[2cmy|2cmy]], [[1f0u|1f0u]], [[2by6|2by6]], [[1o33|1o33]], [[1tgt|1tgt]], [[1c2f|1c2f]], [[3btq|3btq]], [[1az8|1az8]], [[1tgb|1tgb]], [[1qcp|1qcp]], [[1o3e|1o3e]], [[3btt|3btt]], [[1o3o|1o3o]], [[1p2i|1p2i]], [[1tx7|1tx7]], [[1c2m|1c2m]], [[1o30|1o30]], [[1o2z|1o2z]], [[1s0r|1s0r]], [[1sbw|1sbw]], [[1y5a|1y5a]], [[1aq7|1aq7]], [[1qbo|1qbo]], [[1oyq|1oyq]], [[1btw|1btw]], [[1xuj|1xuj]], [[1v2q|1v2q]], [[1utq|1utq]], [[1mtu|1mtu]], [[1tgn|1tgn]], [[1k1p|1k1p]], [[1k1j|1k1j]], [[1gi3|1gi3]], [[1tpp|1tpp]], [[1o2q|1o2q]], [[1o3a|1o3a]], [[1g9i|1g9i]], [[1c9t|1c9t]], [[1hj9|1hj9]], [[1gi4|1gi4]], [[1ox1|1ox1]], [[2ftm|2ftm]], [[2xtt|2xtt]], [[2blv|2blv]], [[1v2w|1v2w]], [[1ql7|1ql7]], [[1g3b|1g3b]], [[1mtw|1mtw]], [[1tld|1tld]], [[1qa0|1qa0]], [[1lqe|1lqe]], [[1o3f|1o3f]], [[1tnh|1tnh]], [[1xug|1xug]], [[1o3b|1o3b]], [[1o3j|1o3j]], [[1rxp|1rxp]], [[1tni|1tni]], [[1c1r|1c1r]], [[1btz|1btz]], [[1y3v|1y3v]], [[3btw|3btw]], [[1v2m|1v2m]], [[1nc6|1nc6]], [[1o2u|1o2u]], [[1yyy|1yyy]], [[1c2g|1c2g]], [[1c1s|1c1s]], [[3btd|3btd]], [[1taw|1taw]], [[1zzz|1zzz]], [[2tgp|2tgp]], [[1jrs|1jrs]], [[1tnl|1tnl]], [[2fx4|2fx4]], [[1c1o|1c1o]], [[1f0t|1f0t]], [[1n6y|1n6y]], [[1k1n|1k1n]], [[1zr0|1zr0]], [[1v2u|1v2u]], [[1jir|1jir]], [[1may|1may]], [[2by5|2by5]], [[2ah4|2ah4]], [[1xuk|1xuk]], [[1gi0|1gi0]], [[2uuy|2uuy]], [[1tgs|1tgs]], [[1tyn|1tyn]], [[1o31|1o31]], [[1v2p|1v2p]], [[2a7h|2a7h]], [[1o37|1o37]], [[2tpi|2tpi]], [[1qbn|1qbn]], [[2bya|2bya]], [[1v2l|1v2l]], [[1o2j|1o2j]], [[4abd|4abd]], [[4tpi|4tpi]], [[4ab8|4ab8]], [[1sfi|1sfi]], [[1p2k|1p2k]], [[1o34|1o34]], [[1xuh|1xuh]], [[2bza|2bza]], [[1g36|1g36]], [[1gbt|1gbt]], [[1g3c|1g3c]], [[1c5v|1c5v]], [[3btg|3btg]], [[1pph|1pph]], [[1cu9|1cu9]], [[1o3n|1o3n]], [[3ptb|3ptb]], [[1o3g|1o3g]], [[1c5r|1c5r]], [[1c5s|1c5s]], [[1xuf|1xuf]], [[4ab9|4ab9]], [[2by9|2by9]], [[1tnj|1tnj]], [[1o2n|1o2n]], [[1c2k|1c2k]], [[1gj6|1gj6]], [[1y3w|1y3w]], [[1auj|1auj]], [[1o2p|1o2p]], [[2j9n|2j9n]], [[4abg|4abg]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[5ptp|5ptp]], [[1o2s|1o2s]], [[1o2t|1o2t]], [[1bjv|1bjv]], [[1c2d|1c2d]], [[1c2e|1c2e]], [[1mts|1mts]], [[1tps|1tps]], [[1tng|1tng]], [[1o2m|1o2m]], [[1c1p|1c1p]], [[1jrt|1jrt]], [[2btc|2btc]], [[1c1t|1c1t]], [[1tnk|1tnk]], [[1o2x|1o2x]], [[1d6r|1d6r]], [[1c2h|1c2h]], [[1o38|1o38]], [[1utp|1utp]], [[1f2s|1f2s]], [[1gi1|1gi1]], [[4aba|4aba]], [[1tio|1tio]], [[1v2k|1v2k]], [[1tpo|1tpo]], [[2blw|2blw]], [[1v2o|1v2o]], [[2fx6|2fx6]], [[1c1n|1c1n]], [[1y3u|1y3u]], [[1y3x|1y3x]], [[1c5p|1c5p]], [[1o2i|1o2i]], [[1c2j|1c2j]], [[4abj|4abj]], [[1n6x|1n6x]], [[1c5u|1c5u]], [[1o3m|1o3m]], [[1v2v|1v2v]], [[1k1o|1k1o]], [[1ghz|1ghz]], [[1y5u|1y5u]], [[1qb1|1qb1]], [[2fi3|2fi3]], [[2ptc|2ptc]], [[1k1l|1k1l]], [[2tgd|2tgd]], [[1y5b|1y5b]], [[1c5t|1c5t]], [[1p2j|1p2j]], [[1smf|1smf]], [[1btp|1btp]], [[2ayw|2ayw]], [[1ppe|1ppe]], [[1btx|1btx]], [[2by8|2by8]], [[1gi6|1gi6]], [[1cu8|1cu8]], [[1ntp|1ntp]], [[1c5q|1c5q]], [[1qb9|1qb9]], [[1g3e|1g3e]], [[1o35|1o35]], [[3btk|3btk]], [[1ejm|1ejm]], [[3ptn|3ptn]], [[1uto|1uto]], [[1o3h|1o3h]], [[2fi4|2fi4]], [[1o2k|1o2k]], [[1o3i|1o3i]], [[1y3y|1y3y]], [[1ppc|1ppc]], [[1o3d|1o3d]], [[1o2y|1o2y]], [[1j8a|1j8a]], [[1c1q|1c1q]], [[4abb|4abb]], [[1o2l|1o2l]], [[1y59|1y59]], [[2tgt|2tgt]], [[3btm|3btm]], [[1v2s|1v2s]], [[1o2o|1o2o]], [[1xui|1xui]], [[1ql8|1ql8]], [[3btf|3btf]], [[1s0q|1s0q]], [[1o2w|1o2w]], [[1bju|1bju]], [[4abe|4abe]], [[1qb6|1qb6]], [[1gi5|1gi5]], [[1o39|1o39]], [[1tab|1tab]], [[1gi2|1gi2]], [[1g3d|1g3d]], [[4abi|4abi]], [[1cu7|1cu7]], [[1tpa|1tpa]], [[1o2h|1o2h]], [[2ftl|2ftl]], [[1mtv|1mtv]], [[1v2r|1v2r]], [[1o3l|1o3l]], [[1o2r|1o2r]], [[1tx8|1tx8]], [[1v2j|1v2j]], [[3bth|3bth]], [[1c2i|1c2i]], [[1o3c|1o3c]], [[1o3k|1o3k]], [[1ezx|1ezx]], [[1k1m|1k1m]], [[1utn|1utn]], [[1ce5|1ce5]], [[2by7|2by7]], [[1o32|1o32]], [[1k1i|1k1i]], [[1yp9|1yp9]], [[1max|1max]], [[1tgc|1tgc]], [[1oph|1oph]], [[3bte|3bte]], [[1v2n|1v2n]], [[3tpi|3tpi]], [[1eb2|1eb2]], [[2tio|2tio]], [[2tld|2tld]], [[1bty|1bty]], [[2ptn|2ptn]], [[2fi5|2fi5]], [[4abh|4abh]], [[1v2t|1v2t]], [[2tga|2tga]], [[1c2l|1c2l]], [[1o2v|1o2v]], [[1o36|1o36]], [[2cmy|2cmy]], [[1f0u|1f0u]], [[2by6|2by6]], [[1o33|1o33]], [[1tgt|1tgt]], [[1c2f|1c2f]], [[3btq|3btq]], [[1az8|1az8]], [[1tgb|1tgb]], [[1qcp|1qcp]], [[1o3e|1o3e]], [[3btt|3btt]], [[1o3o|1o3o]], [[1p2i|1p2i]], [[1tx7|1tx7]], [[1c2m|1c2m]], [[1o30|1o30]], [[1o2z|1o2z]], [[1s0r|1s0r]], [[1sbw|1sbw]], [[1y5a|1y5a]], [[1aq7|1aq7]], [[1qbo|1qbo]], [[1oyq|1oyq]], [[1btw|1btw]], [[1xuj|1xuj]], [[1v2q|1v2q]], [[1utq|1utq]], [[1mtu|1mtu]], [[1tgn|1tgn]], [[1k1p|1k1p]], [[1k1j|1k1j]], [[1gi3|1gi3]], [[1tpp|1tpp]], [[1o2q|1o2q]], [[1o3a|1o3a]], [[1g9i|1g9i]], [[1c9t|1c9t]], [[1hj9|1hj9]], [[1gi4|1gi4]], [[1ox1|1ox1]], [[2ftm|2ftm]], [[2xtt|2xtt]], [[2blv|2blv]], [[1v2w|1v2w]], [[1ql7|1ql7]], [[1g3b|1g3b]], [[1mtw|1mtw]], [[1tld|1tld]], [[1qa0|1qa0]], [[1lqe|1lqe]], [[1o3f|1o3f]], [[1tnh|1tnh]], [[1xug|1xug]], [[1o3b|1o3b]], [[1o3j|1o3j]], [[1rxp|1rxp]], [[1tni|1tni]], [[1c1r|1c1r]], [[1btz|1btz]], [[1y3v|1y3v]], [[3btw|3btw]], [[1v2m|1v2m]], [[1nc6|1nc6]], [[1o2u|1o2u]], [[1yyy|1yyy]], [[1c2g|1c2g]], [[1c1s|1c1s]], [[3btd|3btd]], [[1taw|1taw]], [[1zzz|1zzz]], [[2tgp|2tgp]], [[1jrs|1jrs]], [[1tnl|1tnl]], [[2fx4|2fx4]], [[1c1o|1c1o]], [[1f0t|1f0t]], [[1n6y|1n6y]], [[1k1n|1k1n]], [[1zr0|1zr0]], [[1v2u|1v2u]], [[1jir|1jir]], [[1may|1may]], [[2by5|2by5]], [[2ah4|2ah4]], [[1xuk|1xuk]], [[1gi0|1gi0]], [[2uuy|2uuy]], [[1tgs|1tgs]], [[1tyn|1tyn]], [[1o31|1o31]], [[1v2p|1v2p]], [[2a7h|2a7h]], [[1o37|1o37]], [[2tpi|2tpi]], [[1qbn|1qbn]], [[2bya|2bya]], [[1v2l|1v2l]], [[1o2j|1o2j]], [[4abd|4abd]], [[4tpi|4tpi]], [[4ab8|4ab8]], [[1sfi|1sfi]], [[1p2k|1p2k]], [[1o34|1o34]], [[1xuh|1xuh]], [[2bza|2bza]], [[1g36|1g36]], [[1gbt|1gbt]], [[1g3c|1g3c]], [[1c5v|1c5v]], [[3btg|3btg]], [[1pph|1pph]], [[1cu9|1cu9]], [[1o3n|1o3n]], [[3ptb|3ptb]], [[1o3g|1o3g]], [[1c5r|1c5r]], [[1c5s|1c5s]], [[1xuf|1xuf]], [[4ab9|4ab9]], [[2by9|2by9]], [[1tnj|1tnj]], [[1o2n|1o2n]], [[1c2k|1c2k]], [[1gj6|1gj6]], [[1y3w|1y3w]], [[1auj|1auj]], [[1o2p|1o2p]], [[2j9n|2j9n]], [[4abg|4abg]]</div></td></tr> |
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http:// | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=4abf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4abf OCA], [http://pdbe.org/4abf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4abf RCSB], [http://www.ebi.ac.uk/pdbsum/4abf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4abf ProSAT]</span></td></tr> |
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 20: | Line 20: | ||
==See Also== | ==See Also== | ||
| - | *[[Trypsin|Trypsin]] | + | *[[Trypsin 3D structures|Trypsin 3D structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
| Line 26: | Line 26: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Bos taurus]] | [[Category: Bos taurus]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Trypsin]] | [[Category: Trypsin]] | ||
[[Category: Newman, J]] | [[Category: Newman, J]] | ||
Revision as of 05:08, 19 November 2020
Fragments bound to bovine trypsin for the SAMPL challenge
| |||||||||||
