This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1jie

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Crystal structure of bleomycin-binding protein from bleomycin-producing Streptomyces verticillus complexed with metal-free bleomycin==
==Crystal structure of bleomycin-binding protein from bleomycin-producing Streptomyces verticillus complexed with metal-free bleomycin==
-
<StructureSection load='1jie' size='340' side='right' caption='[[1jie]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='1jie' size='340' side='right'caption='[[1jie]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1jie]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"streptomyces_verticillus"_takita "streptomyces verticillus" takita]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JIE FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1jie]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"streptomyces_verticillus"_takita "streptomyces verticillus" takita]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIE OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1JIE FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BLM:BLEOMYCIN+A2'>BLM</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLM:BLEOMYCIN+A2'>BLM</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1qto|1qto]], [[1ecs|1ecs]], [[1ewj|1ewj]], [[1jif|1jif]]</td></tr>
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1qto|1qto]], [[1ecs|1ecs]], [[1ewj|1ewj]], [[1jif|1jif]]</div></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">blmA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29309 "Streptomyces verticillus" Takita])</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">blmA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29309 "Streptomyces verticillus" Takita])</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jie FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jie OCA], [http://pdbe.org/1jie PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jie RCSB], [http://www.ebi.ac.uk/pdbsum/1jie PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1jie ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1jie FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jie OCA], [http://pdbe.org/1jie PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jie RCSB], [http://www.ebi.ac.uk/pdbsum/1jie PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1jie ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 13: Line 13:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/1jie_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/1jie_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 33: Line 33:
</StructureSection>
</StructureSection>
[[Category: Streptomyces verticillus takita]]
[[Category: Streptomyces verticillus takita]]
 +
[[Category: Large Structures]]
[[Category: Hayashida, M]]
[[Category: Hayashida, M]]
[[Category: Kumagai, T]]
[[Category: Kumagai, T]]

Revision as of 07:32, 25 November 2020

Crystal structure of bleomycin-binding protein from bleomycin-producing Streptomyces verticillus complexed with metal-free bleomycin

PDB ID 1jie

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools