Sandbox Reserved 1634
From Proteopedia
(Difference between revisions)
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glucosamine (GlcNAc) | glucosamine (GlcNAc) | ||
<scene name='86/861616/Important_amino_acids/2'>VIEW IMPORTANT AMINO ACIDS</scene> | <scene name='86/861616/Important_amino_acids/2'>VIEW IMPORTANT AMINO ACIDS</scene> | ||
- | [Image:Hydrogen bonds and metal interactions1.jpg 100px] | + | [[Image:Hydrogen bonds and metal interactions1.jpg|100px|Image:100 pixels]] |
== Structural highlights == | == Structural highlights == | ||
My protein is a epithelial adhesin protein bonded to a Galactose beta 1-3 N-acetyl-D-Glucosamine, it contains 3 to 5 small <scene name='86/861616/Alpha_helix_of_protein/1'>alpha helices</scene> and a core of anti parralel beta sheets also known as the <scene name='86/861616/Beta_sheets/1'>beta sandwich core</scene>. all of the important catalytic amino acids bind to the ligand by hydrogen bonds with the ligand itself or metal interaction with Ca+ its also contains a disulfide bond binding two loops together that are crucial in ligand affinity. These two loops connected by the disulfide bond play a key role in ligand affinity when these loops sequence are changed the protien often accepts a different carbohydrate ligand. Another important structual feature is its lectin calcium dependant qualities, it creates metal interactions with calcium that help bind the Galactose beta 1-3 N-acetyl-D-Glucosamine. the hydrogen bonns and metal interactions allow for less free energy change and easier binding then far from equilibrium reactions that would change the product completely. | My protein is a epithelial adhesin protein bonded to a Galactose beta 1-3 N-acetyl-D-Glucosamine, it contains 3 to 5 small <scene name='86/861616/Alpha_helix_of_protein/1'>alpha helices</scene> and a core of anti parralel beta sheets also known as the <scene name='86/861616/Beta_sheets/1'>beta sandwich core</scene>. all of the important catalytic amino acids bind to the ligand by hydrogen bonds with the ligand itself or metal interaction with Ca+ its also contains a disulfide bond binding two loops together that are crucial in ligand affinity. These two loops connected by the disulfide bond play a key role in ligand affinity when these loops sequence are changed the protien often accepts a different carbohydrate ligand. Another important structual feature is its lectin calcium dependant qualities, it creates metal interactions with calcium that help bind the Galactose beta 1-3 N-acetyl-D-Glucosamine. the hydrogen bonns and metal interactions allow for less free energy change and easier binding then far from equilibrium reactions that would change the product completely. |
Revision as of 00:03, 8 December 2020
This Sandbox is Reserved from 09/18/2020 through 03/20/2021 for use in CHEM 351 Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, IA. This reservation includes Sandbox Reserved 1628 through Sandbox Reserved 1642. |
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Epithelial Adhesins and Their Role in Carbohydrate Binding
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