Transcription initiation factors 3D structures
From Proteopedia
(Difference between revisions)
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**[[1ro4]] - hTFIIB Zn ribbon domain – NMR<br /> | **[[1ro4]] - hTFIIB Zn ribbon domain – NMR<br /> | ||
**[[1ais]], [[1d3u]] - TFIIB C terminal + TBP + DNA – ''Pyrococcus woesei''<br /> | **[[1ais]], [[1d3u]] - TFIIB C terminal + TBP + DNA – ''Pyrococcus woesei''<br /> | ||
| - | **[[1pft]] – | + | **[[1pft]] – PfTFIIB N terminal – ''Pyrococcus furiosus'' – NMR<BR /> |
**[[5o9j]], [[5o9i]] - TFIIB – ''Methanocaldococcus jannaschii'' <br /> | **[[5o9j]], [[5o9i]] - TFIIB – ''Methanocaldococcus jannaschii'' <br /> | ||
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**[[6fic]] – hTFIID subunit 1 + inhibitor<br /> | **[[6fic]] – hTFIID subunit 1 + inhibitor<br /> | ||
**[[3uv5]] – hTFIID subunit 1 bromodomain 1-2<br /> | **[[3uv5]] – hTFIID subunit 1 bromodomain 1-2<br /> | ||
| - | **[[3uv4]] – hTFIID subunit 1 bromodomain 2<br /> | + | **[[3uv4]] – hTFIID subunit 1 bromodomain 2 1501-1635<br /> |
| - | **[[6bqd]] – hTFIID subunit 1 bromodomain 2 + inhibitor <br /> | + | **[[6bqd]], [[5mg2]], [[6p38]], [[6p3a]], [[6p39]] – hTFIID subunit 1 bromodomain 2 + inhibitor <br /> |
**[[3aad]] – hTFIID subunit 1 bromodomain 1-2 + histone chaperone ASF1A<br /> | **[[3aad]] – hTFIID subunit 1 bromodomain 1-2 + histone chaperone ASF1A<br /> | ||
**[[5mg2]] – hTFIID subunit 1 bromodomain 2 + inhibitor<br /> | **[[5mg2]] – hTFIID subunit 1 bromodomain 2 + inhibitor<br /> | ||
**[[4yym]], [[4yyn]] – hTFIID subunit 1 bromodomain 2 + histone peptide<br /> | **[[4yym]], [[4yyn]] – hTFIID subunit 1 bromodomain 2 + histone peptide<br /> | ||
| - | **[[5c13]], [[5wxg]], [[5mxy]] – hTFIID subunit 3 PHD finger + histone peptide<br /> | ||
| - | **[[5wxh]] – hTFIID subunit 3 PHD finger + histone peptide<br /> | ||
**[[5i1q]], [[5i29]] – hTFIID subunit 1 bromodomain 2 + pyrrolopyridone<br /> | **[[5i1q]], [[5i29]] – hTFIID subunit 1 bromodomain 2 + pyrrolopyridone<br /> | ||
| - | **[[ | + | **[[5c13]], [[5wxg]], [[5wxh]], [[5mxy]] – hTFIID subunit 3 PHD finger + histone peptide<br /> |
| + | **[[5wxh]] – hTFIID subunit 3 PHD finger + histone peptide<br /> | ||
**[[4wv4]] - hTFIID subunits 8+10 <br /> | **[[4wv4]] - hTFIID subunits 8+10 <br /> | ||
**[[4grw]] - hTFIID subunits 1+7 <br /> | **[[4grw]] - hTFIID subunits 1+7 <br /> | ||
| - | **[[ | + | **[[6f3t]] - hTFIID subunits 5+6+9 <br /> |
**[[6mzl]] - hTFIID subunits 1-13 + TBP – Cryo EM<br /> | **[[6mzl]] - hTFIID subunits 1-13 + TBP – Cryo EM<br /> | ||
**[[6mzd]] - hTFIID subunits 1,3-6,9-13 + TBP – Cryo EM<br /> | **[[6mzd]] - hTFIID subunits 1,3-6,9-13 + TBP – Cryo EM<br /> | ||
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**[[4oy2]] - yTFIID subunits 1+7 <br /> | **[[4oy2]] - yTFIID subunits 1+7 <br /> | ||
**[[6mip]] - yTFIID subunits 14 <br /> | **[[6mip]] - yTFIID subunits 14 <br /> | ||
| - | **[[5iok]], [[ | + | **[[6lqz]] - yTFIID subunit 14 + STH1EBMC - NMR<br /> |
| + | **[[5iok]], [[5d7e]], [[6miq]], [[6mio]], [[6min]] – yTFIID subunit 14 YEATS domain 1-137 + histone peptide<br /> | ||
**[[6t9j]] - yTFIID subunit 12 + Spt20 + transcription-associated protein – Cryo EM <br /> | **[[6t9j]] - yTFIID subunit 12 + Spt20 + transcription-associated protein – Cryo EM <br /> | ||
**[[6t9k]], [[6t9i]] - yTFIID in SAGA complex – Cryo EM <br /> | **[[6t9k]], [[6t9i]] - yTFIID in SAGA complex – Cryo EM <br /> | ||
| - | **[[6tbm]], [[6tb4]] - TFIID in SAGA complex – ''Komagataella phaffii'' – Cryo EM <br /> | + | **[[6tbm]], [[6tb4]], [[6hqa]] - TFIID in SAGA complex – ''Komagataella phaffii'' – Cryo EM <br /> |
*TFIIE | *TFIIE | ||
| - | **[[5gpy]] - hTFIIE subunits α+β<br /> | + | **[[5gpy]] - hTFIIE subunits α 1-217+β 141-217<br /> |
| - | **[[1vd4]] - hTFIIE Zn finger domain – NMR<br /> | + | **[[1vd4]] - hTFIIE Zn finger domain 113-174 – NMR<br /> |
| - | **[[2rnq]] – hTFIIE C terminal - NMR<br /> | + | **[[2rnq]] – hTFIIE C terminal 378-439 - NMR<br /> |
**[[2rnr]] – hTFIIE C terminal + TFIIH PH domain- NMR<br /> | **[[2rnr]] – hTFIIE C terminal + TFIIH PH domain- NMR<br /> | ||
| + | **[[6xjf]], [[6pln]] – PfTFIIE-a <br /> | ||
*TFIIF | *TFIIF | ||
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**[[1onv]] – hTFIIF C terminal + serine phosphatase peptide - NMR<br /> | **[[1onv]] – hTFIIF C terminal + serine phosphatase peptide - NMR<br /> | ||
**[[2k7l]] – hTFIIF C terminal + FCP1 peptide - NMR<br /> | **[[2k7l]] – hTFIIF C terminal + FCP1 peptide - NMR<br /> | ||
| + | |||
| + | *TFIIH | ||
| + | |||
| + | **[[5ivw]], [[6o9m]] – hTFIIH in preinitiation complex – Cryo EM<br /> | ||
*TF in RNA polymerase II | *TF in RNA polymerase II | ||
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**[[5fz5]], [[6gym]], [[6gyl]] – yTFIIA + yTFIIE + yTFIIF + DNA – Cryo EM<br /> | **[[5fz5]], [[6gym]], [[6gyl]] – yTFIIA + yTFIIE + yTFIIF + DNA – Cryo EM<br /> | ||
**[[6gyk]] – yTFIIA + yTFIIB + yTFIIF + DNA – Cryo EM<br /> | **[[6gyk]] – yTFIIA + yTFIIB + yTFIIF + DNA – Cryo EM<br /> | ||
| + | **[[5sva]] – yTFIIA + yTFIIB + yTFIIE + yTFIIF + DNA – Cryo EM<br /> | ||
**[[4v1o]], [[4v1n]] – yTFIIB + yTFIIF – Cryo EM<br /> | **[[4v1o]], [[4v1n]] – yTFIIB + yTFIIF – Cryo EM<br /> | ||
**[[3k1f]], [[3k7a]], [[4bbr]], [[4bbs]] – yTFIIB <br /> | **[[3k1f]], [[3k7a]], [[4bbr]], [[4bbs]] – yTFIIB <br /> | ||
| - | **[[5fmf | + | **[[5fmf]], [[5oqj]], [[5oqm]] – yTFIIA + yTFIIB + yTFIIE + yTFIIF + yTFIIH + DNA – Cryo EM<br /> |
| + | **[[6kf4]], [[6kf9]] – TFIIF – ''Thermococcus kodakarensis'' - Cryo EM<br /> | ||
| - | *TF RRN | + | *TF RRN or RNA polymerase I-specific transcription initiation factor RRN |
| - | **[[ | + | **[[3tj1]] – yTF RRN3 <br /> |
**[[5g5l]] – yTF RRN3 in RNA polymerase I<br /> | **[[5g5l]] – yTF RRN3 in RNA polymerase I<br /> | ||
**[[6rrd]], [[6rqt]] – yTF RRN3 in RNA polymerase I – Cryo EM<br /> | **[[6rrd]], [[6rqt]] – yTF RRN3 in RNA polymerase I – Cryo EM<br /> | ||
| + | **[[5o7x]] – yTF RRN6+RRN7+RRN11 <br /> | ||
**[[6ruo]] – yTF RRN3+RRN6+RRN11 in RNA polymerase I – Cryo EM<br /> | **[[6ruo]] – yTF RRN3+RRN6+RRN11 in RNA polymerase I – Cryo EM<br /> | ||
**[[5w66]], [[5w65]], [[5w64]], [[5w5y]], [[5oa1]] – yTF RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br /> | **[[5w66]], [[5w65]], [[5w64]], [[5w5y]], [[5oa1]] – yTF RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br /> | ||
Revision as of 09:28, 8 December 2020
3D structures of transcription initiation factors
Updated on 08-December-2020 - For a general description of the protein see Transcription initiation factor
