This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
6ysn
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Human TRPC5 in complex with Pico145 (HC-608)== | ==Human TRPC5 in complex with Pico145 (HC-608)== | ||
| - | <StructureSection load='6ysn' size='340' side='right'caption='[[6ysn]]' scene=''> | + | <StructureSection load='6ysn' size='340' side='right'caption='[[6ysn]], [[Resolution|resolution]] 3.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YSN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6YSN FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6ysn]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YSN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6YSN FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6ysn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ysn OCA], [http://pdbe.org/6ysn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ysn RCSB], [http://www.ebi.ac.uk/pdbsum/6ysn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ysn ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PJQ:7-[(4-chlorophenyl)methyl]-3-methyl-1-(3-oxidanylpropyl)-8-[3-(trifluoromethyloxy)phenoxy]purine-2,6-dione'>PJQ</scene></td></tr> |
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TRPC5, TRP5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6ysn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ysn OCA], [http://pdbe.org/6ysn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ysn RCSB], [http://www.ebi.ac.uk/pdbsum/6ysn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ysn ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI]] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides. | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | TRPC1/4/5 channels are non-specific cation channels implicated in a wide variety of diseases, and TRPC1/4/5 inhibitors have recently entered clinical trials. However, fundamental and translational studies require a better understanding of TRPC1/4/5 channel regulation by endogenous and exogenous factors. Although several potent and selective TRPC1/4/5 modulators have been reported, the paucity of mechanistic insights into their modes-of-action remains a barrier to the development of new chemical probes and drug candidates. Xanthine-based modulators include the most potent and selective TRPC1/4/5 inhibitors described to date, as well as TRPC5 activators. Our previous studies suggest that xanthines interact with a, so far, elusive pocket of TRPC1/4/5 channels that is essential to channel gating. Here we report the structure of a small-molecule-bound TRPC1/4/5 channel-human TRPC5 in complex with the xanthine Pico145-to 3.0 A. We found that Pico145 binds to a conserved lipid binding site of TRPC5, where it displaces a bound phospholipid. Our findings explain the mode-of-action of xanthine-based TRPC1/4/5 modulators, and suggest a structural basis for TRPC1/4/5 modulation by endogenous factors such as (phospho)lipids and Zn(2+) ions. These studies lay the foundations for the structure-based design of new generations of TRPC1/4/5 modulators. | ||
| + | |||
| + | Human TRPC5 structures reveal interaction of a xanthine-based TRPC1/4/5 inhibitor with a conserved lipid binding site.,Wright DJ, Simmons KJ, Johnson RM, Beech DJ, Muench SP, Bon RS Commun Biol. 2020 Nov 23;3(1):704. doi: 10.1038/s42003-020-01437-8. PMID:33230284<ref>PMID:33230284</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6ysn" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Human]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Bon | + | [[Category: Bon, R S]] |
| - | [[Category: Johnson | + | [[Category: Johnson, R M]] |
| - | [[Category: Muench | + | [[Category: Muench, S P]] |
| - | [[Category: Wright | + | [[Category: Wright, D J]] |
| + | [[Category: Inhibitor]] | ||
| + | [[Category: Ion channel]] | ||
| + | [[Category: Membrane protein]] | ||
| + | [[Category: Small molecule]] | ||
| + | [[Category: Tetramer]] | ||
Current revision
Human TRPC5 in complex with Pico145 (HC-608)
| |||||||||||
