7aol
From Proteopedia
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==Structure of SARS-CoV-2 Main Protease bound to Climbazole== | ==Structure of SARS-CoV-2 Main Protease bound to Climbazole== | ||
- | <StructureSection load='7aol' size='340' side='right'caption='[[7aol]]' scene=''> | + | <StructureSection load='7aol' size='340' side='right'caption='[[7aol]], [[Resolution|resolution]] 1.47Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7AOL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7AOL FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7aol]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/2019-ncov 2019-ncov]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7AOL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7AOL FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7aol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7aol OCA], [http://pdbe.org/7aol PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7aol RCSB], [http://www.ebi.ac.uk/pdbsum/7aol PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7aol ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=RQH:(1~{S})-1-(4-chloranylphenoxy)-1-imidazol-1-yl-3,3-dimethyl-butan-2-one'>RQH</scene></td></tr> |
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ORF1ab ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2697049 2019-nCoV])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7aol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7aol OCA], [http://pdbe.org/7aol PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7aol RCSB], [http://www.ebi.ac.uk/pdbsum/7aol PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7aol ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/A0A6M4NAY4_SARS2 A0A6M4NAY4_SARS2]] Forms a hexadecamer with nsp7 (8 subunits of each) that may participate in viral replication by acting as a primase. Alternatively, may synthesize substantially longer products than oligonucleotide primers.[ARBA:ARBA00002182] Forms a hexadecamer with nsp8 (8 subunits of each) that may participate in viral replication by acting as a primase. Alternatively, may synthesize substantially longer products than oligonucleotide primers.[ARBA:ARBA00003443] May participate in viral replication by acting as a ssRNA-binding protein.[ARBA:ARBA00002012] May play a role in the modulation of host cell survival signaling pathway by interacting with host PHB and PHB2. Indeed, these two proteins play a role in maintaining the functional integrity of the mitochondria and protecting cells from various stresses.[ARBA:ARBA00003115] Methyltransferase that mediates mRNA cap 2'-O-ribose methylation to the 5'-cap structure of viral mRNAs. N7-methyl guanosine cap is a prerequisite for binding of nsp16. Therefore plays an essential role in viral mRNAs cap methylation which is essential to evade immune system.[ARBA:ARBA00002840] Mn(2+)-dependent, uridylate-specific enzyme, which leaves 2'-3'-cyclic phosphates 5' to the cleaved bond.[ARBA:ARBA00002798] Multi-functional protein with a zinc-binding domain in N-terminus displaying RNA and DNA duplex-unwinding activities with 5' to 3' polarity. Activity of helicase is dependent on magnesium.[ARBA:ARBA00002960] Plays a pivotal role in viral transcription by stimulating both nsp14 3'-5' exoribonuclease and nsp16 2'-O-methyltransferase activities. Therefore plays an essential role in viral mRNAs cap methylation.[ARBA:ARBA00002697] Responsible for replication and transcription of the viral RNA genome.[ARBA:ARBA00003927] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: 2019-ncov]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | + | [[Category: Awel, S]] | |
- | [[Category: Awel S]] | + | [[Category: Beck, T]] |
- | [[Category: Beck T]] | + | [[Category: Betzel, C]] |
- | [[Category: Betzel C]] | + | [[Category: Brehm, W]] |
- | [[Category: Brehm W]] | + | [[Category: Brognaro, H]] |
- | [[Category: Brognaro H]] | + | [[Category: Chapman, H N]] |
- | [[Category: Chapman | + | [[Category: Chari, A]] |
- | [[Category: Chari A]] | + | [[Category: Domaracky, M]] |
- | [[Category: Domaracky M]] | + | [[Category: Doyle, J J]] |
- | [[Category: Doyle | + | [[Category: Dunkel, I]] |
- | [[Category: Dunkel I]] | + | [[Category: Ehrt, C]] |
- | [[Category: Ehrt C]] | + | [[Category: Ellinger, B]] |
- | [[Category: Ellinger B]] | + | [[Category: Esperanza, G Pena]] |
- | [[Category: | + | [[Category: Falke, S]] |
- | [[Category: | + | [[Category: Feiler, C]] |
- | [[Category: | + | [[Category: Fischer, P]] |
- | [[Category: Fischer P]] | + | [[Category: Fleckenstein, H]] |
- | [[Category: Fleckenstein H]] | + | [[Category: Franca, B Alves]] |
- | [[Category: Galchenkova M]] | + | [[Category: Galchenkova, M]] |
- | [[Category: Gelisio L]] | + | [[Category: Garcia, Y Fernandez]] |
- | [[Category: Gevorkov Y]] | + | [[Category: Gelisio, L]] |
- | [[Category: Ginn H]] | + | [[Category: Gevorkov, Y]] |
- | [[Category: Giseler H]] | + | [[Category: Ginn, H]] |
- | [[Category: Gribbon P]] | + | [[Category: Giseler, H]] |
- | [[Category: Groessler M]] | + | [[Category: Gribbon, P]] |
- | [[Category: Guenther S]] | + | [[Category: Groessler, M]] |
- | [[Category: Hakanpaeae J]] | + | [[Category: Guenther, S]] |
- | [[Category: Han H]] | + | [[Category: Hakanpaeae, J]] |
- | [[Category: Hennicke V]] | + | [[Category: Han, H]] |
- | [[Category: Hilgenfeld R]] | + | [[Category: Hennicke, V]] |
- | [[Category: Knoska J]] | + | [[Category: Hilgenfeld, R]] |
- | [[Category: Koua F]] | + | [[Category: Knoska, J]] |
- | [[Category: Kuzikov M]] | + | [[Category: Koua, F]] |
- | [[Category: Lane | + | [[Category: Kuzikov, M]] |
- | [[Category: Li C]] | + | [[Category: Lane, T J]] |
- | [[Category: Lieske J]] | + | [[Category: Li, C]] |
- | [[Category: Lorenzen K]] | + | [[Category: Lieske, J]] |
- | [[Category: Meents A]] | + | [[Category: Lorenzen, K]] |
- | [[Category: Mehrabi P]] | + | [[Category: Mashour, A Rahmani]] |
- | [[Category: Meier S]] | + | [[Category: Meents, A]] |
- | [[Category: Melo D]] | + | [[Category: Mehrabi, P]] |
- | [[Category: Meyer J]] | + | [[Category: Meier, S]] |
- | [[Category: Noei H]] | + | [[Category: Melo, D]] |
- | [[Category: Norton-Baker B]] | + | [[Category: Meyer, J]] |
- | [[Category: Oberthuer D]] | + | [[Category: Noei, H]] |
- | [[Category: Paulraj | + | [[Category: Norton-Baker, B]] |
- | [[Category: Pearson A]] | + | [[Category: Oberthuer, D]] |
- | [[Category: Peck A | + | [[Category: Paulraj, L X]] |
- | + | [[Category: Pearson, A]] | |
- | [[Category: Perbandt M]] | + | [[Category: Peck, A]] |
- | [[Category: Pletzer-Zelgert J | + | [[Category: Perbandt, M]] |
- | + | [[Category: Pletzer-Zelgert, J]] | |
- | [[Category: Rarey M]] | + | [[Category: Rarey, M]] |
- | [[Category: Reinke P]] | + | [[Category: Reinke, P]] |
- | [[Category: Saouane S]] | + | [[Category: Saouane, S]] |
- | [[Category: Schmidt C]] | + | [[Category: Schmidt, C]] |
- | [[Category: Schubert R]] | + | [[Category: Schubert, R]] |
- | [[Category: Schulz | + | [[Category: Schulz, E C]] |
- | [[Category: Schwinzer M]] | + | [[Category: Schwinzer, M]] |
- | [[Category: Seychell B]] | + | [[Category: Seychell, B]] |
- | [[Category: Tidow H]] | + | [[Category: Tidow, H]] |
- | [[Category: Tolstikova A]] | + | [[Category: Tolstikova, A]] |
- | [[Category: Trost F]] | + | [[Category: Trost, F]] |
- | [[Category: Turk D]] | + | [[Category: Turk, D]] |
- | [[Category: Ullah N]] | + | [[Category: Ullah, N]] |
- | [[Category: Weiss M]] | + | [[Category: Weiss, M]] |
- | [[Category: Werner N]] | + | [[Category: Werner, N]] |
- | [[Category: White | + | [[Category: White, T A]] |
- | [[Category: Wolf M]] | + | [[Category: Wolf, M]] |
- | [[Category: Wollenhaupt J]] | + | [[Category: Wollenhaupt, J]] |
- | [[Category: Yefanov O]] | + | [[Category: Yefanov, O]] |
- | [[Category: Zaliani A]] | + | [[Category: Zaliani, A]] |
- | [[Category: Zhang L]] | + | [[Category: Zhang, L]] |
+ | [[Category: Covid-!9]] | ||
+ | [[Category: Mpro]] | ||
+ | [[Category: Peptide binding protein]] | ||
+ | [[Category: Sars-cov-2]] |
Revision as of 06:57, 9 December 2020
Structure of SARS-CoV-2 Main Protease bound to Climbazole
|
Categories: 2019-ncov | Large Structures | Awel, S | Beck, T | Betzel, C | Brehm, W | Brognaro, H | Chapman, H N | Chari, A | Domaracky, M | Doyle, J J | Dunkel, I | Ehrt, C | Ellinger, B | Esperanza, G Pena | Falke, S | Feiler, C | Fischer, P | Fleckenstein, H | Franca, B Alves | Galchenkova, M | Garcia, Y Fernandez | Gelisio, L | Gevorkov, Y | Ginn, H | Giseler, H | Gribbon, P | Groessler, M | Guenther, S | Hakanpaeae, J | Han, H | Hennicke, V | Hilgenfeld, R | Knoska, J | Koua, F | Kuzikov, M | Lane, T J | Li, C | Lieske, J | Lorenzen, K | Mashour, A Rahmani | Meents, A | Mehrabi, P | Meier, S | Melo, D | Meyer, J | Noei, H | Norton-Baker, B | Oberthuer, D | Paulraj, L X | Pearson, A | Peck, A | Perbandt, M | Pletzer-Zelgert, J | Rarey, M | Reinke, P | Saouane, S | Schmidt, C | Schubert, R | Schulz, E C | Schwinzer, M | Seychell, B | Tidow, H | Tolstikova, A | Trost, F | Turk, D | Ullah, N | Weiss, M | Werner, N | White, T A | Wolf, M | Wollenhaupt, J | Yefanov, O | Zaliani, A | Zhang, L | Covid-!9 | Mpro | Peptide binding protein | Sars-cov-2