7aol

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==Structure of SARS-CoV-2 Main Protease bound to Climbazole==
==Structure of SARS-CoV-2 Main Protease bound to Climbazole==
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<StructureSection load='7aol' size='340' side='right'caption='[[7aol]]' scene=''>
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<StructureSection load='7aol' size='340' side='right'caption='[[7aol]], [[Resolution|resolution]] 1.47&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7AOL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7AOL FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7aol]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/2019-ncov 2019-ncov]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7AOL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7AOL FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7aol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7aol OCA], [http://pdbe.org/7aol PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7aol RCSB], [http://www.ebi.ac.uk/pdbsum/7aol PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7aol ProSAT]</span></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=RQH:(1~{S})-1-(4-chloranylphenoxy)-1-imidazol-1-yl-3,3-dimethyl-butan-2-one'>RQH</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ORF1ab ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2697049 2019-nCoV])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7aol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7aol OCA], [http://pdbe.org/7aol PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7aol RCSB], [http://www.ebi.ac.uk/pdbsum/7aol PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7aol ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/A0A6M4NAY4_SARS2 A0A6M4NAY4_SARS2]] Forms a hexadecamer with nsp7 (8 subunits of each) that may participate in viral replication by acting as a primase. Alternatively, may synthesize substantially longer products than oligonucleotide primers.[ARBA:ARBA00002182] Forms a hexadecamer with nsp8 (8 subunits of each) that may participate in viral replication by acting as a primase. Alternatively, may synthesize substantially longer products than oligonucleotide primers.[ARBA:ARBA00003443] May participate in viral replication by acting as a ssRNA-binding protein.[ARBA:ARBA00002012] May play a role in the modulation of host cell survival signaling pathway by interacting with host PHB and PHB2. Indeed, these two proteins play a role in maintaining the functional integrity of the mitochondria and protecting cells from various stresses.[ARBA:ARBA00003115] Methyltransferase that mediates mRNA cap 2'-O-ribose methylation to the 5'-cap structure of viral mRNAs. N7-methyl guanosine cap is a prerequisite for binding of nsp16. Therefore plays an essential role in viral mRNAs cap methylation which is essential to evade immune system.[ARBA:ARBA00002840] Mn(2+)-dependent, uridylate-specific enzyme, which leaves 2'-3'-cyclic phosphates 5' to the cleaved bond.[ARBA:ARBA00002798] Multi-functional protein with a zinc-binding domain in N-terminus displaying RNA and DNA duplex-unwinding activities with 5' to 3' polarity. Activity of helicase is dependent on magnesium.[ARBA:ARBA00002960] Plays a pivotal role in viral transcription by stimulating both nsp14 3'-5' exoribonuclease and nsp16 2'-O-methyltransferase activities. Therefore plays an essential role in viral mRNAs cap methylation.[ARBA:ARBA00002697] Responsible for replication and transcription of the viral RNA genome.[ARBA:ARBA00003927]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: 2019-ncov]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Alves Franca B]]
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[[Category: Awel, S]]
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[[Category: Awel S]]
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[[Category: Beck, T]]
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[[Category: Beck T]]
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[[Category: Betzel, C]]
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[[Category: Betzel C]]
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[[Category: Brehm, W]]
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[[Category: Brognaro, H]]
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[[Category: Brognaro H]]
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[[Category: Chapman, H N]]
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[[Category: Chapman HN]]
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[[Category: Chari, A]]
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[[Category: Chari A]]
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[[Category: Domaracky, M]]
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[[Category: Domaracky M]]
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[[Category: Doyle, J J]]
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[[Category: Doyle JJ]]
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[[Category: Dunkel, I]]
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[[Category: Dunkel I]]
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[[Category: Ehrt, C]]
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[[Category: Ehrt C]]
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[[Category: Ellinger, B]]
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[[Category: Ellinger B]]
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[[Category: Esperanza, G Pena]]
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[[Category: Feiler C]]
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[[Category: Feiler, C]]
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[[Category: Fernandez Garcia Y]]
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[[Category: Fischer, P]]
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[[Category: Fischer P]]
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[[Category: Fleckenstein, H]]
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[[Category: Fleckenstein H]]
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[[Category: Franca, B Alves]]
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[[Category: Galchenkova M]]
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[[Category: Galchenkova, M]]
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[[Category: Gelisio L]]
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[[Category: Garcia, Y Fernandez]]
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[[Category: Gribbon P]]
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[[Category: Giseler, H]]
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[[Category: Groessler M]]
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[[Category: Gribbon, P]]
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[[Category: Guenther S]]
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[[Category: Groessler, M]]
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[[Category: Hakanpaeae J]]
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[[Category: Guenther, S]]
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[[Category: Han H]]
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[[Category: Hakanpaeae, J]]
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[[Category: Hennicke V]]
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[[Category: Han, H]]
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[[Category: Hilgenfeld R]]
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[[Category: Hennicke, V]]
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[[Category: Knoska J]]
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[[Category: Hilgenfeld, R]]
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[[Category: Koua F]]
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[[Category: Knoska, J]]
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[[Category: Kuzikov M]]
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[[Category: Koua, F]]
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[[Category: Lane TJ]]
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[[Category: Kuzikov, M]]
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[[Category: Li C]]
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[[Category: Lane, T J]]
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[[Category: Lieske J]]
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[[Category: Li, C]]
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[[Category: Lorenzen K]]
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[[Category: Lieske, J]]
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[[Category: Lorenzen, K]]
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[[Category: Mehrabi P]]
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[[Category: Mashour, A Rahmani]]
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[[Category: Meier S]]
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[[Category: Meyer J]]
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[[Category: Meier, S]]
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[[Category: Noei H]]
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[[Category: Melo, D]]
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[[Category: Meyer, J]]
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[[Category: Noei, H]]
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[[Category: Pletzer-Zelgert J]]
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[[Category: Pletzer-Zelgert, J]]
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[[Category: Rarey M]]
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[[Category: Reinke P]]
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[[Category: Reinke, P]]
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[[Category: Saouane S]]
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[[Category: Saouane, S]]
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[[Category: Schmidt C]]
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[[Category: Schubert R]]
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[[Category: Schubert, R]]
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[[Category: Schulz EC]]
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[[Category: Schulz, E C]]
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[[Category: Schwinzer M]]
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[[Category: Werner, N]]
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[[Category: White TA]]
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[[Category: White, T A]]
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[[Category: Wolf M]]
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[[Category: Wolf, M]]
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[[Category: Wollenhaupt J]]
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[[Category: Yefanov O]]
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[[Category: Yefanov, O]]
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[[Category: Zaliani A]]
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[[Category: Zaliani, A]]
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[[Category: Zhang L]]
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[[Category: Zhang, L]]
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[[Category: Covid-!9]]
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[[Category: Mpro]]
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[[Category: Peptide binding protein]]
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[[Category: Sars-cov-2]]

Revision as of 06:57, 9 December 2020

Structure of SARS-CoV-2 Main Protease bound to Climbazole

PDB ID 7aol

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